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@danforthcenter Donald Danforth Plant Science Center

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    110 repositories

    • plantcv

      Public
      Plant phenotyping with image analysis
      sciencebioinformaticsimage-analysisplant-phenotypingplantcv
      Python
      •
      Mozilla Public License 2.0
      •267•690•92•23•Updated Feb 21, 2025Feb 21, 2025

    • field-paper-21-22

      Public
      This repo is for the scripts I am running to analyze the Bart Lab's 2021 and 2022 field data.
      R
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • pcvr

      Public
      R functions for use with plantCV output
      R
      •0•4•0•0•Updated Feb 20, 2025Feb 20, 2025

    • syncomBuildR

      Public
      R
      •0•1•0•1•Updated Feb 20, 2025Feb 20, 2025

    • plantcv-geospatial

      Public
      Geospatial add-on package to PlantCV
      Python
      •
      Mozilla Public License 2.0
      •1•1•8•6•Updated Feb 19, 2025Feb 19, 2025

    • plantcv-extras

      Public
      An add-on package for PlantCV with extra tools
      Python
      •
      Mozilla Public License 2.0
      •0•0•2•1•Updated Feb 14, 2025Feb 14, 2025

    • photo-maize-paper

      Public
      Code and sample data associated with the JoVE publication doi: 10.3791/67619
      Jupyter Notebook
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • FiReMAGE

      Public
      R
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Feb 9, 2025Feb 9, 2025

    • ansible-raspberry-pi-paper

      Public
      data and scripts associated with graphs in ansible-raspberry pi paper
      Mozilla Public License 2.0
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • aws-tools

      Public
      Danforth Center tools for working with AWS
      Python
      •
      Mozilla Public License 2.0
      •0•1•2•0•Updated Jan 29, 2025Jan 29, 2025

    • plantcv-tutorial-camera-calibration

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•2•Updated Jan 24, 2025Jan 24, 2025

    • plantcv-tutorial-hyperspectral

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•1•Updated Jan 24, 2025Jan 24, 2025

    • plantcv-tutorial-color-correction

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•1•Updated Jan 23, 2025Jan 23, 2025

    • plantcv-tutorial-simple-rgb-workflow

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • plantcv-tutorial-grayscale

      Public
      Tutorial for analyzing grayscale image data using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•2•Updated Jan 21, 2025Jan 21, 2025

    • plantcv-tutorial-photosynthesis-multi

      Public
      Tutorial for using PlantCV for analysis of photosynthesis images that contain multiple objects (such as multiple plants or leaves).
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•2•Updated Jan 21, 2025Jan 21, 2025

    • plantcv-tutorial-seeds

      Public
      seed workflow tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Jan 21, 2025Jan 21, 2025

    • plantcv-tutorial-germination

      Public
      Notebook for performing germination studies using plantCV
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•2•0•2•Updated Jan 21, 2025Jan 21, 2025

    • plantcv-tutorial-template

      Public
      A template for new PlantCV tutorial repositories
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •3•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • plantcv-tasselyzer-tutorial

      Public
      Jupyter Notebook
      •
      MIT License
      •3•1•0•1•Updated Dec 18, 2024Dec 18, 2024

    • plantcv-annotate

      Public
      add-on package for PlantCV annotation tools
      Python
      •
      Mozilla Public License 2.0
      •0•1•7•5•Updated Dec 12, 2024Dec 12, 2024

    • ansible-raspberry-pi

      Public
      Python
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • KIG_v2

      Public
      Updated version of the KIG list using OrthoFinder
      R
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • plantcv-tutorial-watershed

      Public
      watershed tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Nov 17, 2024Nov 17, 2024

    • plantcv-tutorial-arabidopsis-tray

      Public
      Tutorial for analyzing top-down trays of plants with PlantCV
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Nov 17, 2024Nov 17, 2024

    • plantcv-tutorial-v4-multiobject

      Public
      Tutorial for analyzing multiple plants, leaves, or objects using PlantCV v4.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•2•Updated Nov 15, 2024Nov 15, 2024

    • plantcv-tutorial-morphology

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Nov 14, 2024Nov 14, 2024

    • plantcv-tutorial-pollen-germination

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • plantcv-stomata-tutorial-pcv4

      Public
      Tutorial for analyzing microscopy images of stomata using PlantCV version 4.0
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • plantcv-tutorial-thermal

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024