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    56 repositories

    • POME_Evaluation

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • netmap

      Public
      Netmap package for gene regulatory network inference.
      transcriptomicssingle-cellgrns
      transcriptomicssingle-cellgrns
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Apr 24, 2026Apr 24, 2026

    • FLAG-X

      Public
      FLow cytometry Automated Gating toolboX
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Apr 23, 2026Apr 23, 2026

    • compbiol

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • ChemoTreeVsDL

      Public
      Code for reproducing the analyses from the paper ‘Non-temporal tree-based models outperform temporal deep learning models in the prediction of chemotherapy-indu…
      Python
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • alternet

      Public
      Create and annotate Alternative Splicing aware Gene Regulatory Networks
      Jupyter Notebook
      •2•4•0•1•Updated Apr 17, 2026Apr 17, 2026

    • enquire_web

      Public
      Web tool extension for the ENQUIRE gene-mesh term PubMed mining application
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • FLAG-X-validation

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • digest-web

      Public
      Vue
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 30, 2026Mar 30, 2026

    • POME

      Public
      Python package for the graph-based embedding method POME
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 25, 2026Mar 25, 2026

    • robust-web

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 17, 2026Mar 17, 2026

    • scXMatch_paper

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Mar 17, 2026Mar 17, 2026

    • digest-api

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • scxmatch

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Jan 29, 2026Jan 29, 2026

    • SwitchTFI-validation

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • SwitchTFI

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • alternet-manuscript

      Public
      Companion repository for alterenet manuscript
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 21, 2025Nov 21, 2025

    • SignifiKANTE

      Public
      Efficient P-value computation for gene regulatory networks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Nov 20, 2025Nov 20, 2025

    • SignifiKANTE_Results

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • GRN-FinDeR

      Public
      Novel statistical methodology for FDR(False Discovery Rate) analysis of Gene Regulatory Networks
      Jupyter Notebook
      •1•0•1•0•Updated Nov 7, 2025Nov 7, 2025

    • arboreto_fdr

      Public
      A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •35•0•0•0•Updated Nov 4, 2025Nov 4, 2025

    • grn-nextflow

      Public
      Boostdiff workflow
      R
      •
      MIT License
      •0•1•8•0•Updated Sep 30, 2025Sep 30, 2025

    • robust_bias_aware

      Public
      Study-bias-aware, robust disease module mining
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 28, 2025Aug 28, 2025

    • data-engineering-exercises

      Public
      This repository contains study material for the excercises in Data Engineering
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jul 15, 2025Jul 15, 2025

    • KINference-Evaluation-Scripts

      Public
      R
      •0•0•0•0•Updated May 15, 2025May 15, 2025

    • KINference

      Public
      R
      •
      Other
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • Gentl

      Public
      Gentl (GENeTic aLgorithm for predicting stage and grade from medical scans of patients with cancer)
      Python
      •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • ppi-network-simulation

      Public
      Simulates emergence of observed PPI networks under study bias
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • SHouT

      Public
      Spatial heterogeneity quantification tool
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • gcn-insights

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024
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