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    15 repositories

    • VEP-Benchmark

      Public
      Python
      •1•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • DIONYSUS_data

      Public
      Python
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • AMBROSIA

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • PEGASUS

      Public
      MD-derived protein flexibility prediction
      Python
      •0•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • ICARUS

      Public
      Flexible protein structural alignment based on Protein Units
      protein-structureproteinprotein-structure-alignment
      Perl
      •2•6•0•0•Updated Nov 16, 2024Nov 16, 2024

    • SWORD2

      Public
      SWift and Optimized Recognition of protein Domains
      proteinsprotein-structureprotein-domainsprotein-unitsprotein-junctions
      Perl
      •
      Other
      •1•27•0•0•Updated Sep 23, 2024Sep 23, 2024

    • pepit

      Public
      The PepIT program proposes peptides that may interact with a given protein. PepIT is based on a non-sequential alignment algorithm to identify peptide binding sites that share geometrical and physicochemical properties with regions on the target protein.
      R
      •0•1•0•0•Updated Jun 21, 2024Jun 21, 2024

    • CompareCBS

      Public
      Comparison of carbohydrate binding site (CBS) geometry using a graph-based method
      R
      •
      MIT License
      •0•0•0•0•Updated May 28, 2024May 28, 2024

    • PoincareMSA

      Public
      Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparative analysis of their amino acid sequences through multiple sequence alignment. While a direct analysis of the resulting data allows to identify conserved regions, it does not provide a general and broad view on …
      Jupyter Notebook
      •3•11•3•0•Updated Sep 22, 2023Sep 22, 2023

    • PYTHIA

      Public
      Deep Learning Approach For Local Protein Conformation Prediction
      deep-learningprotein-structurepredictionprotein-blocks
      Perl
      •0•3•0•1•Updated Jun 14, 2023Jun 14, 2023

    • MEDUSA

      Public
      A Deep Learning based protein flexibility prediction tool.
      deep-learningpredictionproteinflexibilityprotein-sequence
      Perl
      •
      Other
      •2•8•1•0•Updated Oct 18, 2022Oct 18, 2022

    • test_fork

      Public
      This is a fork of my test repo
      0•0•0•0•Updated Sep 2, 2022Sep 2, 2022

    • openfold

      Public
      Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
      Python
      •
      Apache License 2.0
      •565•0•0•0•Updated Jun 23, 2022Jun 23, 2022

    • GC-ANN-Enzyme-Concentration-Selection

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2019Oct 28, 2019

    • ANN-Glycolysis-Flux-Prediction

      Public
      Flux prediction using artificial neural network (ANN) for the upper part of glycolysis.
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 12, 2019Mar 12, 2019