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    18 repositories

    • Translational-buffering

      Public
      Code for manuscript "Translational buffering as a mechanism to tune gene expression"
      0•0•0•0•Updated Feb 5, 2026Feb 5, 2026

    • Translational-buffering-ML

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • TACC-Examples

      Public
      1•1•0•0•Updated Jan 23, 2026Jan 23, 2026

    • ribobaser

      Public
      Organizes functions to work with read counts extracted from ribo files
      R
      •
      Other
      •3•0•3•1•Updated Dec 18, 2025Dec 18, 2025

    • CenikLab.github.io

      Public
      HTML
      •
      MIT License
      •2•1•0•4•Updated Dec 17, 2025Dec 17, 2025

    • TEC-Network-Analyses

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

    • TE_classic_ML

      Public
      Python
      •
      GNU General Public License v3.0
      •2•9•0•0•Updated May 9, 2025May 9, 2025

    • coTE_paper

      Public
      code and to generate main figures
      R
      •1•1•0•0•Updated May 4, 2025May 4, 2025

    • TE_model

      Public
      Python
      •1•3•0•0•Updated May 2, 2025May 2, 2025

    • consistency_Ribo-seq

      Public
      Python
      •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • satmut_utils

      Public
      Simulation and variant calling in paired-end, targeted RNA-seq saturation mutagenesis data.
      Python
      •
      GNU General Public License v3.0
      •1•2•1•0•Updated Dec 25, 2023Dec 25, 2023

    • non_readable_ranges

      Public
      A collection of scripts to find duplicate and therefore non-readable ranges in a transcriptome
      Jupyter Notebook
      •0•0•0•0•Updated Sep 23, 2023Sep 23, 2023

    • ribo-itp_paper

      Public
      Scripts and references used for the Ribo-ITP paper
      Jupyter Notebook
      •1•1•0•0•Updated Jun 29, 2023Jun 29, 2023

    • satmut_utils_supplementary

      Public
      Supplementary files for satmut_utils secondary analysis
      1•0•0•0•Updated Dec 5, 2022Dec 5, 2022

    • satmut_utils_refs

      Public
      Curated references files for use with satmut_utils
      1•0•0•0•Updated Apr 7, 2022Apr 7, 2022

    • plot_examples

      Public
      Examples of plots for publications
      HTML
      •0•0•0•0•Updated Nov 19, 2021Nov 19, 2021

    • ribo-itp_paper_references

      Public
      Reference files of the human and mouse transcriptomes for the Ribo-ITP paper
      Jupyter Notebook
      •0•1•0•0•Updated Oct 21, 2021Oct 21, 2021

    • sars-cov2_NSP1_protein

      Public
      Supplementary files of our sars-cov2 NSP1 protein manuscript
      Jupyter Notebook
      •1•0•0•0•Updated Jun 7, 2021Jun 7, 2021
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