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    • Code for manuscript "Translational buffering as a mechanism to tune gene expression"
      0000Updated Feb 5, 2026Feb 5, 2026
    • Jupyter Notebook
      0000Updated Jan 29, 2026Jan 29, 2026
    • 1100Updated Jan 23, 2026Jan 23, 2026
    • ribobaser

      Public
      Organizes functions to work with read counts extracted from ribo files
      R
      Other
      3031Updated Dec 18, 2025Dec 18, 2025
    • HTML
      MIT License
      2104Updated Dec 17, 2025Dec 17, 2025
    • Jupyter Notebook
      0000Updated Oct 6, 2025Oct 6, 2025
    • Python
      GNU General Public License v3.0
      2900Updated May 9, 2025May 9, 2025
    • code and to generate main figures
      R
      1100Updated May 4, 2025May 4, 2025
    • TE_model

      Public
      Python
      1300Updated May 2, 2025May 2, 2025
    • Python
      0000Updated Jan 30, 2024Jan 30, 2024
    • Simulation and variant calling in paired-end, targeted RNA-seq saturation mutagenesis data.
      Python
      GNU General Public License v3.0
      1210Updated Dec 25, 2023Dec 25, 2023
    • A collection of scripts to find duplicate and therefore non-readable ranges in a transcriptome
      Jupyter Notebook
      0000Updated Sep 23, 2023Sep 23, 2023
    • Scripts and references used for the Ribo-ITP paper
      Jupyter Notebook
      1100Updated Jun 29, 2023Jun 29, 2023
    • Supplementary files for satmut_utils secondary analysis
      1000Updated Dec 5, 2022Dec 5, 2022
    • Curated references files for use with satmut_utils
      1000Updated Apr 7, 2022Apr 7, 2022
    • Examples of plots for publications
      HTML
      0000Updated Nov 19, 2021Nov 19, 2021
    • Reference files of the human and mouse transcriptomes for the Ribo-ITP paper
      Jupyter Notebook
      0100Updated Oct 21, 2021Oct 21, 2021
    • Supplementary files of our sars-cov2 NSP1 protein manuscript
      Jupyter Notebook
      1000Updated Jun 7, 2021Jun 7, 2021
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