openpipeline 0.3.0

• Add tx_processing pipeline with following components:
  • filter_with_counts
  • filter_with_scrublet
  • filter_with_hvg
  • do_filter
  • normalize_total
  • regress_out
  • log1p
  • pca
  • find_neighbors
  • leiden
  • umap

openpipeline 0.2.0

Functionality

• Added convert_10x_to_h5ad and download_10x_dataset components.

Minor changes

• Workflow bd_rhapsody_wta: Minor change to workflow to allow for easy processing of multiple samples with a tsv.

• Component bd_rhapsody_wta: Added more parameters, --parallel and --timestamps.

• Added pbmc_1k_protein_v3 as a test resource.

• Translate bd_rhapsody_extracth5ad from R into Python script.

• bd_rhapsody_wta: Remove temporary directory after execution.

openpipeline 0.1.0

• Initial release containing only a bd_rhapsody_wta pipeline and corresponding components.