Code

Develop#2212

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rmtfleming merged 75 commits intomasteropencobra/cobratoolbox:masterfrom developopencobra/cobratoolbox:developCopy head branch name to clipboardJan 10, 2024

Commits

Commits on Sep 5, 2023

• typo at addCOBRAVariables.m

  silvtal

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• MMT bug: createMultipleSpeciesModel.m ignored the biomasses argument from joinModelsPairwiseFromList.m

  silvtal

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Commits on Sep 21, 2023

• Fixing bug for xomicsTomodelm

  rosieluo2021

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• fixing bug

  rosieluo2021

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Commits on Oct 12, 2023

• Fix file location path

  bramnap

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Commits on Nov 6, 2023

• Update modelExtraction.m

  CodeGeasrb

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Commits on Nov 7, 2023

• recent edits

  ithiele

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• Merge pull request #2182 from CodeGeasrb/master

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  rmtfleming

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• Merge pull request #2183 from ithiele/it_10_10_2023

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  rmtfleming

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• Merge pull request #2179 from bramnap/updateMexFastFVA

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  rmtfleming

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• Merge pull request #2177 from rosieluo2021/metaPD

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  rmtfleming

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• Merge pull request #2175 from silvtal/master

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  rmtfleming

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Commits on Nov 20, 2023

• Update individualised lab report

  annasheehy

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• Update createNewMetaboliteStructure.m

  farid-zare

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• Update testFluxShifts.m

  farid-zare

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• Update calculateFluxShifts.m

  farid-zare

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• Update filterNonFluxReactions.m

  farid-zare

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• Update testNonFluxReactions.m

  farid-zare

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Commits on Nov 21, 2023

• Update testRateLimittingReactions.m

  farid-zare

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• Update filterRateLimittingReactions.m

  farid-zare

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• updated paths in tutorials and added VMH reaction data

  trjhensen

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• Update testCheckModelPreFBA.m

  farid-zare

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• Update testPrintFluxVector.m

  farid-zare

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• Update printFluxVector.m

  farid-zare

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• Update refData_printFluxVectorFormula.txt

  farid-zare

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• Merge pull request #2188 from trjhensen/develop

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  ithiele

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• Merge pull request #2186 from FaridZare17/MetabAnnotaor1

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  ithiele

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• Merge pull request #2185 from annasheehy/indLabReport-fix

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  ithiele

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• changes to reportTemplate

  ithiele

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• Merge pull request #2189 from ithiele/it_21_11_2023

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  ithiele

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• changes to generateMetaboScore

  ithiele

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• Merge pull request #2191 from ithiele/it_21_11_2023c

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  ithiele

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Commits on Nov 22, 2023

• Update refData_printFluxVectorFormula.txt

  farid-zare

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• Update printFluxVector.m

  farid-zare

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• Update testPrintFluxVector.m

  farid-zare

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• Update testCheckModelPreFBA.m

  farid-zare

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• Fixing bugs for testChangeCobraSolverm and testMergeTwoModelsm

  rosieluo2021

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Commits on Nov 27, 2023

• Fixing a bug where ATN does not match the reference

  hadjar11

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• Merge pull request #2194 from hadjar11/testMoieties

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  rmtfleming

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• Merge pull request #2193 from rosieluo2021/metaPD

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  rmtfleming

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• Merge pull request #2187 from FaridZare17/Debug_testAll_function

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  rmtfleming

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Commits on Nov 28, 2023

• Added option to create boxplots in mgPipe

  

  Almut Heinken

  committed
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• Added option to create boxplots in mgPipe

  

  Almut Heinken

  committed
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Commits on Nov 29, 2023

• new function for eshcer map

  Yanjun2021

  committed
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Commits on Nov 30, 2023

• Update getFormulaAndChargeFromInChI.m

  Sami990

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• Update testFindRxnsFromGenes.m

  Sami990

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• Update getFormulaAndChargeFromInChI.m

  Sami990

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• Update testFindRxnsFromGenes.m

  Sami990

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• testPrintConstraintm

  Yanjun2021

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• debug testPrintConstraintsm

  Yanjun2021

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• Debug testBiomassPrecursorCheck function

  hadjar11

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• Merge pull request #2199 from Yanjun2021/newFunc_escherMap

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  rmtfleming

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• Merge pull request #2201 from Yanjun2021/testPrintConstraint

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  rmtfleming

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• Merge pull request #2202 from hadjar11/231129

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  rmtfleming

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Commits on Dec 8, 2023

• Update testPrintFluxVector.m

  farid-zare

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• Update refData_printFluxVectorFormula.txt

  farid-zare

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• Update printFluxVector.m

  farid-zare

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• Update testCheckModelPreFBA.m

  farid-zare

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Commits on Dec 14, 2023

• update function in XomicsToModel

  Yanjun2021

  committed
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Commits on Dec 17, 2023

• adding MatGPT to CobraToolbox

  

  Farid Zare

  authored and

  Farid Zare

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• test

  

  Farid Zare

  authored and

  Farid Zare

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• remove folders

  

  Farid Zare

  authored and

  Farid Zare

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• remove unwanted files

  

  Farid Zare

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  Farid Zare

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• test

  

  Farid Zare

  authored and

  Farid Zare

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• remove test

  

  Farid Zare

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  Farid Zare

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Commits on Dec 18, 2023

• FastLeakTest modification

  Yanjun2021

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Commits on Dec 19, 2023

• Merge pull request #2208 from Yanjun2021/FastLeakTest-modification

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  rmtfleming

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• Merge pull request #2207 from farid-zare/MatGPT

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  rmtfleming

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Commits on Jan 8, 2024

• Add MatGPT

  farid-zare

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Commits on Jan 9, 2024

• Merge pull request #2211 from farid-zare/MatGPT_submodule

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  rmtfleming

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Commits on Jan 10, 2024

• Merge pull request #2205 from Yanjun2021/update-function-in-XomicsToModel

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  rmtfleming

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• Merge pull request #2196 from almut-heinken/addPlotOption

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  rmtfleming

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• Merge pull request #2200 from Sami990/Debug-testAll-function

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  rmtfleming

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• Merge pull request #2204 from farid-zare/update-testAll-function2

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  rmtfleming

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• Merge branch 'master' into develop

  rmtfleming

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