Update codecov.yml #123
Workflow file for this run
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| name: MATLAB Tests and Code Coverage | |
| on: | |
| pull_request: | |
| branches: | |
| - '**' | |
| jobs: | |
| build: | |
| runs-on: self-hosted | |
| steps: | |
| - name: Checkout PR Code | |
| uses: actions/checkout@v4 # Fetches the PR branch | |
| - name: Rebase PR Branch on Top of Develop | |
| run: | | |
| git fetch origin | |
| git checkout ${{ github.event.pull_request.head.ref }} # Checkout PR branch | |
| git rebase origin/develop # Rebase PR branch on develop | |
| git push origin +HEAD:test-rebase --force # Push rebased branch | |
| - name: Clone Rebased Branch on King Server | |
| run: | | |
| ssh saleh@king "rm -rf cobratoolbox && git clone -b test-rebase https://github.com/opencobra/cobratoolbox.git cobratoolbox" | |
| - name: Run MATLAB Tests on King Server | |
| run: | | |
| ssh saleh@king "matlab -batch \"run('cobratoolbox/initCobraToolbox.m'); diary('test_results.txt'); run('cobratoolbox/test/testAll.m'); diary off;\"" | |
| - name: Retrieve Test Results from Server | |
| run: | | |
| scp saleh@king:cobratoolbox/test_results.txt . | |
| - name: Upload Test Report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-report | |
| path: test_results.txt | |
| - name: Upload Coverage to Codecov | |
| if: always() # Ensure it runs even if tests fail | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ${{ github.workspace }}/CodeCovTestResults.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true | |
| flags: matlab | |
| comment: true | |
| - name: Upload Test Results to Codecov | |
| if: always() | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Cleanup Temporary Rebased Branch | |
| if: always() | |
| run: | | |
| git push origin --delete test-rebase || true # Delete the test-rebase branch after tests |