Update codecov.yml #122

	name: MATLAB Tests and Code Coverage

	on:
	pull_request:
	branches:
	- '**'

	jobs:
	build:
	runs-on: self-hosted
	steps:
	- name: Checkout PR Code
	uses: actions/checkout@v4 # Fetches the PR branch

	- name: Merge PR Branch with Develop
	run: \|
	git fetch origin
	git checkout -b test-merge
	git merge origin/develop --allow-unrelated-histories --no-edit
	git push origin test-merge --force # Push the merged branch temporarily

	- name: Clone Merged Branch on King Server
	run: \|
	ssh saleh@king "rm -rf cobratoolbox && git clone -b test-merge https://github.com/opencobra/cobratoolbox.git cobratoolbox"

	- name: Run MATLAB Tests on King Server
	run: \|
	ssh saleh@king "matlab -batch \"run('cobratoolbox/initCobraToolbox.m'); diary('test_results.txt'); run('cobratoolbox/test/testAll.m'); diary off;\""

	- name: Retrieve Test Results from Server
	run: \|
	scp saleh@king:cobratoolbox/test_results.txt .

	- name: Upload Test Report
	uses: actions/upload-artifact@v4
	with:
	name: test-report
	path: test_results.txt

	- name: Upload Coverage to Codecov
	if: always() # Ensure it runs even if tests fail
	uses: codecov/codecov-action@v3
	with:
	files: ${{ github.workspace }}/CodeCovTestResults.xml
	token: ${{ secrets.CODECOV_TOKEN }}
	fail_ci_if_error: true
	flags: matlab
	comment: true

	- name: Upload Test Results to Codecov
	if: always()
	uses: codecov/test-results-action@v1
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

	- name: Cleanup Temporary Merged Branch
	if: always()
	run: \|
	git push origin --delete test-merge \|\| true # Delete the test-merge branch after tests

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