Merge pull request #2394 from farid-zare/CI #118
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| name: MATLAB Tests and Code Coverage | ||
| on: | ||
| pull_request: | ||
| branches: | ||
| - '**' | ||
| jobs: | ||
| build: | ||
| runs-on: self-hosted | ||
| steps: | ||
| - name: Checkout PR Code | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| submodules: recursive # Ensures GitHub Actions checks out submodules properly | ||
| - name: Initialize and Update Submodules | ||
| run: | | ||
| git submodule deinit --all --force # Remove broken submodules | ||
| git submodule update --init --recursive --force | ||
| git submodule sync --recursive | ||
| - name: Merge PR with Develop | ||
| run: | | ||
| git fetch origin develop | ||
| git checkout -b test-branch | ||
| git merge origin/develop --allow-unrelated-histories --no-edit | ||
| - name: Clone COBRA Toolbox | ||
| run: | | ||
| git clone https://github.com/opencobra/cobratoolbox.git cobratoolbox | ||
| - name: Run MATLAB Tests | ||
| run: | | ||
| matlab -batch "run('cobratoolbox/initCobraToolbox.m'); diary('test_results.txt'); run('cobratoolbox/testAll.m'); diary off;" | ||
| - name: Debug: Check If Coverage File Exists | ||
| run: | | ||
| ls -l $(pwd) | ||
| find . -name "CodeCovTestResults.xml" | ||
| - name: Upload Test Report | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: test-report | ||
| path: test_results.txt | ||
| - name: Upload Coverage to Codecov | ||
| if: always() # Ensure it runs even if tests fail | ||
| uses: codecov/codecov-action@v3 | ||
| with: | ||
| files: ${{ github.workspace }}/CodeCovTestResults.xml | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| fail_ci_if_error: true | ||
| flags: matlab | ||
| comment: true | ||
| - name: Upload Test Results to Codecov | ||
| if: always() | ||
| uses: codecov/test-results-action@v1 | ||
| with: | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
