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53 Open 31 Closed
53 Open 31 Closed
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Issues list

Haploid underflow impossible to recover for [sample]
#90 opened Nov 29, 2024 by LimKaiShi
Error:[31mERROR: [0mCould not find conditioning haplotypes for [1032052] / check options --pbwt-* and --ibd2-*
#89 opened May 6, 2024 by hangsuUNC
Reference dataset for Phase 3
#88 opened Jul 12, 2023 by Anahit19
MacOS install error
#86 opened Feb 25, 2023 by jpbreed90
T2T chromosome maps?
#85 opened Jan 24, 2023 by JosephLalli
Error: Underflow impossible to recover
#84 opened Oct 31, 2022 by chantisakee
ERROR: Problem opening index file for hg19.fa
#83 opened Oct 20, 2022 by Npaffen
2
Read-based phasing with underflow error
#82 opened Jul 27, 2022 by Luker121
Indel, CNV and Structural Variation (SV) in Shapeit4 phasing analysis
#81 opened Jul 8, 2022 by Shicheng-Guo
2
AVX2 usage is determined at compile-time, not runtime
#80 opened Jul 7, 2022 by pettyalex
Reading in files and genetic maps is done sequentially, and could be parallelized across threads
#79 opened Jul 6, 2022 by pettyalex
1
ERROR: Population based phasing for less than 20 individuals
#77 opened Jun 9, 2022 by yaowei2010
1
How to handle missing genotype
#76 opened Jun 8, 2022 by rained1989
1
Illegal instruction (core dumped)
#73 opened Feb 24, 2022 by Grelot
3
Cannot extract map files
#72 opened Feb 8, 2022 by aritra90
1
Scaffold and WhatsHap (physical and statistical phasing?)
#71 opened Nov 6, 2021 by olekto
1
how to reduce the RAM when phasing a large cohort (~1200) of whole genome sequencing data with about 10Mb?
#70 opened Oct 29, 2021 by xinkaitong
1
phasing without imputation
#69 opened Oct 22, 2021 by Shicheng-Guo
2
Losing ~60% of variants from sequence data with SHAPEIT
#68 opened Sep 27, 2021 by klmartinez
2
shapeit4.2 - lto1: internal compiler error
#65 opened Sep 15, 2021 by psammarco
5
haplotype inference for local region
#64 opened Sep 13, 2021 by Shicheng-Guo
3
easy way to estimate required memory
#63 opened Sep 10, 2021 by Shicheng-Guo
1
Weird and incorrect behavior when filling missing genotypes
#61 opened Jul 23, 2021 by freeseek
2
Core dump on invoking on CentOS8
#60 opened Jul 15, 2021 by brucedesertrat
1
Compilation Issue GCC 5.3.1
#59 opened Jul 7, 2021 by denisemauldin
2
ProTip! no:milestone will show everything without a milestone.