user is qiime2 in luke's image

Author: eeholmes

images/aomlomics-jh/Dockerfile

@@ -1,17 +1,11 @@
 FROM docker.io/aomlomics/tourmaline:latest
 
-USER root
-ENV NB_USER=jovyan \
-    NB_UID=1000
+ENV NB_USER=qiime2 \
+    NB_UID=1000 \
+    CONDA_DIR=/opt/conda
 ENV HOME=/home/${NB_USER}
 
-RUN echo "Creating ${NB_USER} user..." \
-    # Create a group for the user to be part of, with gid same as uid
-    && groupadd --gid ${NB_UID} ${NB_USER}  \
-    # Create non-root user, with given gid, uid and create $HOME
-    && useradd --create-home --gid ${NB_UID} --no-log-init --uid ${NB_UID} ${NB_USER} \
-    # Make sure that /srv is owned by non-root user, so we can install things there
-    && chown -R ${NB_USER}:${NB_USER} /srv
+USER ${NB_USER} 
 
 # add the packages needed for jupyterhubs to the base environment
 COPY jhub-environment.yml jhub-environment.yml
@@ -22,9 +16,7 @@ RUN conda install --name snakemake ipykernel && conda clean --all
 RUN conda install --name qiime2-2023.5 ipykernel && conda clean --all
 
 # Register the kernels so you can open in notebooks
-RUN python -m ipykernel install --prefix /srv/conda/envs/snakemake --name snakemake --display-name snakemake
-RUN python -m ipykernel install --prefix /srv/conda/envs/qiime2-2023.5 --name qiime2-2023.5 --display-name qiime2
-USER ${NB_USER}
+RUN python -m ipykernel install --prefix ${CONDA_DIR}/envs/snakemake --name snakemake --display-name snakemake
+RUN python -m ipykernel install --prefix ${CONDA_DIR}/envs/qiime2-2023.5 --name qiime2-2023.5 --display-name qiime2
 
-USER ${NB_USER} 
 WORKDIR /home/${NB_USER}