add ipykernel

Author: eeholmes

.github/workflows/docker-image-aomlomics-jh.yml

@@ -1,4 +1,4 @@
-name: Docker Image CI coastwatch
+name: Docker Image CI AOML-omics
 on:
   workflow_dispatch: null
   push:

images/aomlomics-jh/Dockerfile

@@ -18,8 +18,8 @@ COPY jhub-environment.yml jhub-environment.yml
 RUN conda env update --name base -f jhub-environment.yml && conda clean --all
 
 # add packages needed for extra kernels in the notebooks
-RUN conda env update --name snakemake ipykernel && conda clean --all
-RUN conda env update --name qiime2-2023.5 ipykernel && conda clean --all
+RUN conda install --name snakemake ipykernel && conda clean --all
+RUN conda install --name qiime2-2023.5 ipykernel && conda clean --all
 
 # Register the kernels so you can open in notebooks
 RUN python -m ipykernel install --prefix /srv/conda/envs/snakemake --name snakemake --display-name snakemake