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| # Details | ||
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| Date : 2023-04-28 12:00:52 | ||
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| Directory c:\\Users\\stefa\\Dropbox\\Jotun Hein - Part C Projects\\Manolache\\Code\\Evolutionary Toroidal Difussions\\TorusEvol | ||
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| Total : 32 files, 10378 codes, 505 comments, 575 blanks, all 11458 lines | ||
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| [Summary](results.md) / Details / [Diff Summary](diff.md) / [Diff Details](diff-details.md) | ||
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| ## Files | ||
| | filename | language | code | comment | blank | total | | ||
| | :--- | :--- | ---: | ---: | ---: | ---: | | ||
| | [TorusEvol/.ipynb_checkpoints/PairEvol-checkpoint.ipynb](/TorusEvol/.ipynb_checkpoints/PairEvol-checkpoint.ipynb) | JSON | 3,658 | 0 | 1 | 3,659 | | ||
| | [TorusEvol/AncestorReconstruction.ipynb](/TorusEvol/AncestorReconstruction.ipynb) | JSON | 0 | 0 | 1 | 1 | | ||
| | [TorusEvol/PairEvol.ipynb](/TorusEvol/PairEvol.ipynb) | JSON | 3,658 | 0 | 1 | 3,659 | | ||
| | [TorusEvol/ProteinViewer.ipynb](/TorusEvol/ProteinViewer.ipynb) | JSON | 101 | 0 | 1 | 102 | | ||
| | [TorusEvol/README.md](/TorusEvol/README.md) | Markdown | 5 | 0 | 3 | 8 | | ||
| | [TorusEvol/TriEvol.ipynb](/TorusEvol/TriEvol.ipynb) | JSON | 0 | 0 | 1 | 1 | | ||
| | [TorusEvol/src/EvolutionSimulator.jl](/TorusEvol/src/EvolutionSimulator.jl) | Julia | 90 | 10 | 31 | 131 | | ||
| | [TorusEvol/src/PairEvol.jl](/TorusEvol/src/PairEvol.jl) | Julia | 179 | 26 | 70 | 275 | | ||
| | [TorusEvol/src/TorusEvol.jl](/TorusEvol/src/TorusEvol.jl) | Julia | 73 | 133 | 50 | 256 | | ||
| | [TorusEvol/src/distributions/AbstractProcess.jl](/TorusEvol/src/distributions/AbstractProcess.jl) | Julia | 45 | 18 | 15 | 78 | | ||
| | [TorusEvol/src/distributions/CTMC.jl](/TorusEvol/src/distributions/CTMC.jl) | Julia | 51 | 19 | 22 | 92 | | ||
| | [TorusEvol/src/distributions/Common.jl](/TorusEvol/src/distributions/Common.jl) | Julia | 23 | 4 | 7 | 34 | | ||
| | [TorusEvol/src/distributions/EvolHMM.jl](/TorusEvol/src/distributions/EvolHMM.jl) | Julia | 42 | 10 | 12 | 64 | | ||
| | [TorusEvol/src/distributions/JumpingProcess.jl](/TorusEvol/src/distributions/JumpingProcess.jl) | Julia | 90 | 12 | 22 | 124 | | ||
| | [TorusEvol/src/distributions/MixtureProductProcess.jl](/TorusEvol/src/distributions/MixtureProductProcess.jl) | Julia | 116 | 12 | 18 | 146 | | ||
| | [TorusEvol/src/distributions/RamachandranProcess.jl](/TorusEvol/src/distributions/RamachandranProcess.jl) | Julia | 14 | 2 | 3 | 19 | | ||
| | [TorusEvol/src/distributions/WrappedDiffusion.jl](/TorusEvol/src/distributions/WrappedDiffusion.jl) | Julia | 193 | 54 | 73 | 320 | | ||
| | [TorusEvol/src/distributions/WrappedNormal.jl](/TorusEvol/src/distributions/WrappedNormal.jl) | Julia | 95 | 50 | 40 | 185 | | ||
| | [TorusEvol/src/experiments/DihedralAngleCorrelations.jl](/TorusEvol/src/experiments/DihedralAngleCorrelations.jl) | Julia | 36 | 1 | 12 | 49 | | ||
| | [TorusEvol/src/experiments/IndelAngleChanges.jl](/TorusEvol/src/experiments/IndelAngleChanges.jl) | Julia | 84 | 2 | 14 | 100 | | ||
| | [TorusEvol/src/models/TKF92.jl](/TorusEvol/src/models/TKF92.jl) | Julia | 136 | 65 | 40 | 241 | | ||
| | [TorusEvol/src/models/WAG.jl](/TorusEvol/src/models/WAG.jl) | Julia | 8 | 0 | 6 | 14 | | ||
| | [TorusEvol/src/objects/Alignment.jl](/TorusEvol/src/objects/Alignment.jl) | Julia | 55 | 10 | 22 | 87 | | ||
| | [TorusEvol/src/objects/Data.jl](/TorusEvol/src/objects/Data.jl) | Julia | 20 | 13 | 9 | 42 | | ||
| | [TorusEvol/src/objects/Polypeptide.jl](/TorusEvol/src/objects/Polypeptide.jl) | Julia | 62 | 8 | 20 | 90 | | ||
| | [TorusEvol/src/utils/Backbone.jl](/TorusEvol/src/utils/Backbone.jl) | Julia | 136 | 13 | 30 | 179 | | ||
| | [TorusEvol/test.ipynb](/TorusEvol/test.ipynb) | JSON | 1,251 | 0 | 1 | 1,252 | | ||
| | [TorusEvol/test/distributions/EvolHMM.jl](/TorusEvol/test/distributions/EvolHMM.jl) | Julia | 44 | 0 | 14 | 58 | | ||
| | [TorusEvol/test/distributions/WrappedDiffusion.jl](/TorusEvol/test/distributions/WrappedDiffusion.jl) | Julia | 0 | 0 | 1 | 1 | | ||
| | [TorusEvol/test/distributions/WrappedNormal.jl](/TorusEvol/test/distributions/WrappedNormal.jl) | Julia | 25 | 4 | 4 | 33 | | ||
| | [TorusEvol/test/models/TKF92.jl](/TorusEvol/test/models/TKF92.jl) | Julia | 76 | 38 | 26 | 140 | | ||
| | [TorusEvol/test/runtests.jl](/TorusEvol/test/runtests.jl) | Julia | 12 | 1 | 5 | 18 | | ||
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| [Summary](results.md) / Details / [Diff Summary](diff.md) / [Diff Details](diff-details.md) |
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| # Diff Details | ||
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| Date : 2023-04-28 12:00:52 | ||
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| Directory c:\\Users\\stefa\\Dropbox\\Jotun Hein - Part C Projects\\Manolache\\Code\\Evolutionary Toroidal Difussions\\TorusEvol | ||
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| Total : 0 files, 0 codes, 0 comments, 0 blanks, all 0 lines | ||
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| [Summary](results.md) / [Details](details.md) / [Diff Summary](diff.md) / Diff Details | ||
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| ## Files | ||
| | filename | language | code | comment | blank | total | | ||
| | :--- | :--- | ---: | ---: | ---: | ---: | | ||
|
|
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| [Summary](results.md) / [Details](details.md) / [Diff Summary](diff.md) / Diff Details |
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| @@ -0,0 +1,2 @@ | ||
| "filename", "language", "", "comment", "blank", "total" | ||
| "Total", "-", , 0, 0, 0 |
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| @@ -0,0 +1,19 @@ | ||
| # Diff Summary | ||
|
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| Date : 2023-04-28 12:00:52 | ||
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| Directory c:\\Users\\stefa\\Dropbox\\Jotun Hein - Part C Projects\\Manolache\\Code\\Evolutionary Toroidal Difussions\\TorusEvol | ||
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| Total : 0 files, 0 codes, 0 comments, 0 blanks, all 0 lines | ||
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| [Summary](results.md) / [Details](details.md) / Diff Summary / [Diff Details](diff-details.md) | ||
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| ## Languages | ||
| | language | files | code | comment | blank | total | | ||
| | :--- | ---: | ---: | ---: | ---: | ---: | | ||
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| ## Directories | ||
| | path | files | code | comment | blank | total | | ||
| | :--- | ---: | ---: | ---: | ---: | ---: | | ||
|
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| [Summary](results.md) / [Details](details.md) / Diff Summary / [Diff Details](diff-details.md) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,22 @@ | ||
| Date : 2023-04-28 12:00:52 | ||
| Directory : c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol | ||
| Total : 0 files, 0 codes, 0 comments, 0 blanks, all 0 lines | ||
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| Languages | ||
| +----------+------------+------------+------------+------------+------------+ | ||
| | language | files | code | comment | blank | total | | ||
| +----------+------------+------------+------------+------------+------------+ | ||
| +----------+------------+------------+------------+------------+------------+ | ||
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| Directories | ||
| +------+------------+------------+------------+------------+------------+ | ||
| | path | files | code | comment | blank | total | | ||
| +------+------------+------------+------------+------------+------------+ | ||
| +------+------------+------------+------------+------------+------------+ | ||
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| Files | ||
| +----------+----------+------------+------------+------------+------------+ | ||
| | filename | language | code | comment | blank | total | | ||
| +----------+----------+------------+------------+------------+------------+ | ||
| | Total | | 0 | 0 | 0 | 0 | | ||
| +----------+----------+------------+------------+------------+------------+ |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| "filename", "language", "JSON", "Markdown", "Julia", "comment", "blank", "total" | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\.ipynb_checkpoints\PairEvol-checkpoint.ipynb", "JSON", 3658, 0, 0, 0, 1, 3659 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\AncestorReconstruction.ipynb", "JSON", 0, 0, 0, 0, 1, 1 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\PairEvol.ipynb", "JSON", 3658, 0, 0, 0, 1, 3659 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\ProteinViewer.ipynb", "JSON", 101, 0, 0, 0, 1, 102 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\README.md", "Markdown", 0, 5, 0, 0, 3, 8 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\TriEvol.ipynb", "JSON", 0, 0, 0, 0, 1, 1 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\EvolutionSimulator.jl", "Julia", 0, 0, 90, 10, 31, 131 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\PairEvol.jl", "Julia", 0, 0, 179, 26, 70, 275 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\TorusEvol.jl", "Julia", 0, 0, 73, 133, 50, 256 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\distributions\AbstractProcess.jl", "Julia", 0, 0, 45, 18, 15, 78 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\distributions\CTMC.jl", "Julia", 0, 0, 51, 19, 22, 92 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\distributions\Common.jl", "Julia", 0, 0, 23, 4, 7, 34 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\distributions\EvolHMM.jl", "Julia", 0, 0, 42, 10, 12, 64 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\distributions\JumpingProcess.jl", "Julia", 0, 0, 90, 12, 22, 124 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\distributions\MixtureProductProcess.jl", "Julia", 0, 0, 116, 12, 18, 146 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\distributions\RamachandranProcess.jl", "Julia", 0, 0, 14, 2, 3, 19 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\distributions\WrappedDiffusion.jl", "Julia", 0, 0, 193, 54, 73, 320 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\distributions\WrappedNormal.jl", "Julia", 0, 0, 95, 50, 40, 185 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\experiments\DihedralAngleCorrelations.jl", "Julia", 0, 0, 36, 1, 12, 49 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\experiments\IndelAngleChanges.jl", "Julia", 0, 0, 84, 2, 14, 100 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\models\TKF92.jl", "Julia", 0, 0, 136, 65, 40, 241 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\models\WAG.jl", "Julia", 0, 0, 8, 0, 6, 14 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\objects\Alignment.jl", "Julia", 0, 0, 55, 10, 22, 87 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\objects\Data.jl", "Julia", 0, 0, 20, 13, 9, 42 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\objects\Polypeptide.jl", "Julia", 0, 0, 62, 8, 20, 90 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\src\utils\Backbone.jl", "Julia", 0, 0, 136, 13, 30, 179 | ||
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| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\test\distributions\EvolHMM.jl", "Julia", 0, 0, 44, 0, 14, 58 | ||
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| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\test\models\TKF92.jl", "Julia", 0, 0, 76, 38, 26, 140 | ||
| "c:\Users\stefa\Dropbox\Jotun Hein - Part C Projects\Manolache\Code\Evolutionary Toroidal Difussions\TorusEvol\test\runtests.jl", "Julia", 0, 0, 12, 1, 5, 18 | ||
| "Total", "-", 8668, 5, 1705, 505, 575, 11458 |
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