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Reproducible workflows for the data analysis of "Baseline" project

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Reproducible workflows for 2020 Nature Medicine paper

Broad immune activation underlies shared set point signatures for vaccine responsiveness in healthy individuals and disease activity in patients with lupus

Authors: Yuri Kotliarov, Rachel Sparks, Andrew J. Martins, Matthew P. Mulè, Yong Lu, Meghali Goswami, Lela Kardava, Romain Banchereau, Virginia Pascual, Angelique Biancotto, Jinguo Chen, Pamela L. Schwartzberg, Neha Bansal, Candace C. Liu, Foo Cheung, Susan Moir, John S. Tsang



See Workflow.Rmd and CITE-seq_Workflow.Rmd for instructions.


Data/Software repository on NIH Figshare.com: https://doi.org/10.35092/yhjc.c.4753772



If you use our data (including CITE-seq data) or code for your work please cite the following publication:

Kotliarov, Y., Sparks, R. et al. Broad immune activation underlies shared set point signatures for vaccine responsiveness in healthy individuals and disease activity in patients with lupus. Nat. Med. DOI: https://doi.org/10.1038/s41591-020-0769-8 (2020)



General contact: John Tsang ([email protected])

Questions about software/code: Yuri Kotliarov ([email protected])

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Reproducible workflows for the data analysis of "Baseline" project

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