Module to register study for assembly uploads#18
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ochkalova merged 11 commits intonf-core:devfrom Oct 29, 2025
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Oct 29, 2025
modules/local/registerstudy/meta.yml
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| type: value | ||
| description: | | ||
| Library information with the study. | ||
| Example: "metagenome" |
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Only 2 options are supported: metagenome or metatranscriptome. Please add this info to the description
modules/local/registerstudy/meta.yml
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| identifier: null | ||
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| input: | ||
| ### TODO nf-core: Add a description of all of the variables used as input |
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Please remove all TODO comments
modules/local/registerstudy/meta.yml
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| output: | ||
| ### TODO nf-core: Add a description of all of the variables used as output | ||
| bam: |
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It's name is different, I think it's study_accession, but check please
modules/local/registerstudy/meta.yml
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| - study: | ||
| type: value | ||
| description: | | ||
| Study accession or name to register in ENA. |
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It should be Study accession that has been registered in ENA.
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#8
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).