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6 changes: 6 additions & 0 deletions .github/workflows/nf-test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,8 @@ concurrency:
cancel-in-progress: true

env:
WEBIN_ACCOUNT: ${{ secrets.WEBIN_ACCOUNT }}
WEBIN_PASSWORD: ${{ secrets.WEBIN_PASSWORD }}
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
NFT_VER: "0.9.3"
NFT_WORKDIR: "~"
Expand Down Expand Up @@ -81,6 +83,8 @@ jobs:
- "25.04.0"
- "latest-everything"
env:
WEBIN_ACCOUNT: ${{ secrets.WEBIN_ACCOUNT }}
WEBIN_PASSWORD: ${{ secrets.WEBIN_PASSWORD }}
NXF_ANSI_LOG: false
TOTAL_SHARDS: ${{ needs.nf-test-changes.outputs.total_shards }}

Expand All @@ -96,6 +100,8 @@ jobs:
env:
NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
NXF_VERSION: ${{ matrix.NXF_VER }}
WEBIN_ACCOUNT: ${{ secrets.WEBIN_ACCOUNT }}
WEBIN_PASSWORD: ${{ secrets.WEBIN_PASSWORD }}
with:
profile: ${{ matrix.profile }}
shard: ${{ matrix.shard }}
Expand Down
1 change: 1 addition & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -7,5 +7,6 @@ testing/
testing*
*.pyc
null/
.nf-test*
.idea/
test_data
8 changes: 7 additions & 1 deletion modules.json
Original file line number Diff line number Diff line change
Expand Up @@ -5,9 +5,15 @@
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"fastavalidator": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"],
"patch": "modules/nf-core/fastavalidator/fastavalidator.diff"
},
"multiqc": {
"branch": "master",
"git_sha": "e10b76ca0c66213581bec2833e30d31f239dec0b",
"git_sha": "af27af1be706e6a2bb8fe454175b0cdf77f47b49",
"installed_by": ["modules"]
}
}
Expand Down
7 changes: 7 additions & 0 deletions modules/nf-core/fastavalidator/environment.yml

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173 changes: 173 additions & 0 deletions modules/nf-core/fastavalidator/fastavalidator.diff

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82 changes: 82 additions & 0 deletions modules/nf-core/fastavalidator/main.nf

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69 changes: 69 additions & 0 deletions modules/nf-core/fastavalidator/meta.yml

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