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71 Open 619 Closed
71 Open 619 Closed
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Issues list

rnaseq workflow isn't outputing .merged.gene_counts.tsv bug Something isn't working
#1505 opened Feb 12, 2025 by diegogotex
Issue in RNA seq pipeline bug Something isn't working
#1504 opened Feb 12, 2025 by Varda06
issue while running nf core
#1502 opened Feb 5, 2025 by Varda06
1
SortMeRNA stats in MultiQC report are reported for read2 bug Something isn't working
#1501 opened Jan 31, 2025 by audrey-bollas
salmon seems to remove transcripts
#1500 opened Jan 31, 2025 by jedi-bogate
Execution time of module tin.py
#1498 opened Jan 29, 2025 by reshu23
Arm profile platform should be linux/arm64 bug Something isn't working
#1497 opened Jan 29, 2025 by birnbera
1
Indexing only run does not produce all indexes when using skip_alignment option bug Something isn't working
#1494 opened Jan 23, 2025 by pmoris
File "salmon.merged.gene_counts.tsv" Contains Floating-Point Values Instead of Raw Integer Counts bug Something isn't working
#1491 opened Jan 22, 2025 by Aeget1000
2
FATAL: While making image from oci registry: while building SIF from layers: conveyor failed to get when pulling a Singularity container bug Something isn't working
#1489 opened Jan 21, 2025 by b-lac
4
No isoform-level quants from Star_Salmon Output.
#1487 opened Jan 16, 2025 by kimberzhu
1
Error for single reads during FASTQ linting preprocessing bug Something isn't working
#1483 opened Jan 8, 2025 by cchapus
3
working with gene panels or single genes (e.g., NF1) in the nf-core/rnaseq pipeline
#1472 opened Dec 18, 2024 by huma1995
1
Unify SummarizedExperiment output enhancement
#1465 opened Dec 10, 2024 by grst
2
ERROR Not able to pull image of ('biocontainers/bioconductor-tximeta:1.20.1--r43hdfd78af_0') bug Something isn't working
#1457 opened Nov 26, 2024 by yaya-O19
singularity.registry ignored when pulling nf-core/bedtools_coreutils image bug Something isn't working
#1455 opened Nov 21, 2024 by mathob
4
Warn user if both transcript_fasta and additional_fasta are provided. enhancement
#1450 opened Nov 13, 2024 by siddharthab
Sample name changed 3.16 bug Something isn't working
#1449 opened Nov 4, 2024 by fjosefdz
Error in findColumnWithAllEntries(ids, metadata) : No column contains all vector entries bug Something isn't working
#1445 opened Oct 29, 2024 by RaverJay
2
root filesystem extraction failed: extract command failed: ERROR : Failed to create user namespace: user namespace not supported by your system bug Something isn't working
#1444 opened Oct 29, 2024 by JinchaoChen112
Remove need for use of Seqera conda channels enhancement
#1431 opened Oct 23, 2024 by pinin4fjords
@pabloaledo
Add ARM support for hisat2 enhancement wontfix This will not be worked on
#1430 opened Oct 23, 2024 by pinin4fjords
Add ARM support for Bracken enhancement
#1429 opened Oct 23, 2024 by pinin4fjords
@pabloaledo
Add ARM support for kraken2 enhancement
#1428 opened Oct 23, 2024 by pinin4fjords
@pabloaledo
strandness error bug Something isn't working
#1420 opened Oct 17, 2024 by aheravi
3
ProTip! What’s not been updated in a month: updated:<2025-01-13.