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Properly test the cram output of bwa/mem and bwamem2/mem

enhancementNew feature or requestNew feature or request

nf-test

testsRelated to automated testsRelated to automated tests

Status: Open.

#9354 In nf-core/modules;

· famosab opened on Nov 6, 2025

GATK4 conda failures

bugSomething isn't workingSomething isn't working

CI-issuecontinous integration issuecontinous integration issue

conda-fail

testsRelated to automated testsRelated to automated tests

Status: Open.

#9092 In nf-core/modules;

· matthdsm opened on Sep 18, 2025

Identify test data for nf-test for this module

nf-test

testsRelated to automated testsRelated to automated tests

Status: Open.

Task

#7999 In nf-core/modules;

· jen-reeve opened on Mar 24, 2025

Swap test file paths to use <code>testdata_base_path</code>

testsRelated to automated testsRelated to automated tests

Status: Open.

#5848 In nf-core/modules;

· SPPearce opened on Jun 19, 2024

nf-test Github actions decompress automatically tar.gz outputs when they should not

bugSomething isn't workingSomething isn't working

nf-test

testsRelated to automated testsRelated to automated tests

Status: Open.

#5547 In nf-core/modules;

· toniher opened on Apr 30, 2024

[FEATURE] Add stub for hla-la

nf-test

testsRelated to automated testsRelated to automated tests

Status: Open.

#4448 In nf-core/modules;

· karthikram-takara opened on Nov 28, 2023

Implement unit-test for full datasets

enhancementNew feature or requestNew feature or request

hackathon2023Topic for the hackathon of March 2023Topic for the hackathon of March 2023

testsRelated to automated testsRelated to automated tests

Status: Open.

#243 In nf-core/modules;

· JoseEspinosa opened on Feb 23, 2021