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15 Open 24 Closed
15 Open 24 Closed
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Issues list

Seqkit replace is inefficient for large samplesheets bug Something isn't working
#78 opened Feb 6, 2025 by BioWilko
Pipeline should check for file name uniqueness (without .gz) before any processing occurs enhancement Improvement for existing functionality
#76 opened Feb 6, 2025 by jfy133
1
Move file preparation code into it's own subworkflow bug Something isn't working
#72 opened Jan 30, 2025 by jfy133 First release
@jfy133
Combining input fastas is inefficient for large datasets bug Something isn't working
#64 opened Jan 21, 2025 by BioWilko First release
CAT_CAT Fails with large sample sheets bug Something isn't working
#63 opened Jan 21, 2025 by BioWilko First release
Add support for KMCP databases enhancement Improvement for existing functionality
#53 opened Oct 17, 2024 by jfy133 First release
@LilyAnderssonLee
2
Consider using nf-boost to clean up intermediate files from GUNZIP/CAT processes? enhancement Improvement for existing functionality
#43 opened Oct 7, 2024 by jfy133 Second release
Add support for metacache db enhancement Improvement for existing functionality
#39 opened Jul 5, 2024 by ChillarAnand Second release
2
Document with large warning of uncompressing of all FASTA files (because of Kraken2 and Centrifuge...) enhancement Improvement for existing functionality
#31 opened Apr 11, 2024 by jfy133 First release
1
Consider input genome quality before building enhancement Improvement for existing functionality
#27 opened Feb 27, 2024 by jfy133 Second release
3
Docs section: input file descriptions enhancement Improvement for existing functionality
#24 opened Feb 15, 2024 by jfy133 First release
4
Add support for giving NCBI acc2tax files to MALT databases enhancement Improvement for existing functionality
#21 opened Feb 8, 2024 by jfy133 First release
1
@jfy133
1
[BEFORE RELEASE] Rename to taxdbcreator? enhancement Improvement for existing functionality
#18 opened Jan 5, 2024 by jfy133 First release
Consider database reduction options enhancement Improvement for existing functionality
#16 opened Dec 14, 2023 by jfy133 Second release
2
Generate taxprofiler samplesheet enhancement Improvement for existing functionality
#15 opened Dec 14, 2023 by jfy133 Second release
1
@jfy133
1
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