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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    A Python toolbox for analysing body movements across space and time

    Python 172 62

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    18 4

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 24 22

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 28 5

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A package to manage electrophysiology analysis.

    Python 22 15

Repositories

Showing 10 of 62 repositories
  • datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    neuroinformatics-unit/datashuttle’s past year of commit activity
    Python 24 BSD-3-Clause 22 43 (1 issue needs help) 19 Updated Apr 10, 2025
  • neuroinformatics-unit.github.io Public

    Home website of the Neuroinformatics Unit

    neuroinformatics-unit/neuroinformatics-unit.github.io’s past year of commit activity
    9 BSD-3-Clause 0 15 3 Updated Apr 10, 2025
  • movement Public

    A Python toolbox for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 172 BSD-3-Clause 62 103 46 Updated Apr 10, 2025
  • slides-NIU-tea-hour Public

    Slides for the internal SWC tea hour

    neuroinformatics-unit/slides-NIU-tea-hour’s past year of commit activity
    1 BSD-3-Clause 0 0 0 Updated Apr 10, 2025
  • ethology Public

    Data processing tools for animal behavioural analysis

    neuroinformatics-unit/ethology’s past year of commit activity
    Python 16 BSD-3-Clause 19 27 12 Updated Apr 10, 2025
  • actions Public

    Re-usable GitHub Action scripts

    neuroinformatics-unit/actions’s past year of commit activity
    10 MIT 3 6 0 Updated Apr 10, 2025
  • photon-mosaic Public

    Automate analysis and tracking of multiple calcium imaging datasets to compare parameters choices

    neuroinformatics-unit/photon-mosaic’s past year of commit activity
    Python 2 GPL-3.0 0 1 1 Updated Apr 10, 2025
  • .github Public
    neuroinformatics-unit/.github’s past year of commit activity
    6 MIT 0 0 0 Updated Apr 10, 2025
  • gsoc Public

    A repository for our participation in Google Summer of Code

    neuroinformatics-unit/gsoc’s past year of commit activity
    11 73 0 9 Updated Apr 10, 2025
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    neuroinformatics-unit/derotation’s past year of commit activity
    Python 7 BSD-3-Clause 1 7 (1 issue needs help) 3 Updated Apr 9, 2025
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