[FIX] Use jq to handle GraphDB credentials payloads with special characters

[alyssadai]

• Closes Graph passwords with some special characters are not escaped #104

Changes proposed in this pull request:

• Install jq in GraphDB container to construct JSON payloads for curl requests for setting graph credentials
  • most robust method of ensuring that special characters in the JSON body are escaped
  • other methods tested:
    • reading file contents directly into JSON body (instead of using environment variable) in curl request, using cat or heredoc ❌
    • constructing whole JSON payload 'manually' by first writing to a temporary payload.json, and then sending the temp file in curl ❌
    • formatting JSON payload in Python - not installed ❌
• Manually tested updated recipe using passwords containing \, ", $

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[surchs]

Looks good @alyssadai, and thanks for addressing!

This is good to go, but could you already open an issue to revisit the "install jq every time" solution, e.g. by making our own image on top of the graphDB one. That might also be a good place to see if we shouldn't upgrade the graphDB image tag we're pulling.

🧑‍🍳

[neurobagel-bot]

🚀 PR was released in v0.4.2 🚀