[MNT] Updated compatibility.yaml file and e2e tests (#78)

* Fixed trailing slash

* Fixed trailing slash in the name

* Fixed the query param

* Set up cypress screenshots

* Revert "Set up cypress screenshots"

This reverts commit 215adcd.

* Modify `NB_API_QUERY_URL` in the `compatibility.yaml`

* Updated nightly job

* Renamed workflow name

* Added `Tool version compatibility test` badge to README.md

* Fixed the README.md

.github/workflows/compatibility.yaml

@@ -1,4 +1,4 @@
-name: Compatibility of
+name: Tool version compatibility test
 
 on:
   workflow_dispatch:
@@ -18,6 +18,11 @@ jobs:
         run: |
           cp template.env .env
           cp local_nb_nodes.template.json local_nb_nodes.json
+
+      - name: Edit NB_API_QUERY_URL env var
+        working-directory: .
+        run: |
+          sed -i 's|^NB_API_QUERY_URL=.*|NB_API_QUERY_URL=http://localhost:8080|g' .env
       
       - name: Run docker compose
         working-directory: .
@@ -76,6 +81,11 @@ jobs:
           cp local_nb_nodes.template.json local_nb_nodes.json
           sed -i 's/latest/nightly/g' .env
       
+      - name: Edit NB_API_QUERY_URL env var
+        working-directory: .
+        run: |
+          sed -i 's|^NB_API_QUERY_URL=.*|NB_API_QUERY_URL=http://localhost:8080|g' .env
+      
       - name: Run docker compose
         working-directory: .
         run: |

README.md

@@ -1,6 +1,13 @@
+<div align="center">
+
 # recipes
 Configuration files for a Neurobagel deployment.
 
+<a href="https://github.com/neurobagel/recipes/actions/workflows/compatibility.yaml">
+        <img src="https://img.shields.io/github/actions/workflow/status/neurobagel/query-tool/component-test.yaml?color=8FBC8F&label=Tool version compatibility test&style=flat-square" alt="Tool version compatibility test">
+    </a>
+</div>
+
 ## How to use
 For detailed instructions on deploying Neurobagel for your use case, see the official Neurobagel documentation on [setting up a local knowledge graph (node)](https://neurobagel.org/getting_started/) and [configuration options](https://neurobagel.org/config/).
 

cypress/e2e/simple-test.cy.js

@@ -8,13 +8,13 @@ describe('Full stack e2e', () => {
     cy.get('[data-cy="result-container"]').contains("from Local graph 1",{matchCase: false});
   })
   it('API', () => {
-    cy.request("localhost:8000/query/").as("query");
+    cy.request("localhost:8000/query").as("query");
     cy.get("@query").should((response) => {
       expect(response.status).to.eq(200);
     });
   });
   it("Federation API", () => {
-    cy.request("localhost:8080/query/?node=http://api:8000/").as("query");
+    cy.request("localhost:8080/query?node_url=http://api:8000").as("query");
     cy.get("@query").should((response) => {
       expect(response.status).to.eq(200);
     });

docker-compose.yml

@@ -1,7 +1,7 @@
 services:
 
   api:
-    image: "neurobagel/api:${NB_NAPI_TAG:-latest}"
+    image: "neurobagel/api:${NB_NAPI_TAG:-nightly}"
     profiles:
       - "local_node"
       - "full_stack"
@@ -50,7 +50,7 @@ services:
       - db_user_password
 
   federation:
-    image: "neurobagel/federation_api:${NB_FAPI_TAG:-latest}"
+    image: "neurobagel/federation_api:${NB_FAPI_TAG:-nightly}"
     profiles:
       - "local_federation"
       - "full_stack"
@@ -65,7 +65,7 @@ services:
       NB_QUERY_CLIENT_ID: ${NB_QUERY_CLIENT_ID}
 
   query_federation:
-    image: "neurobagel/query_tool:${NB_QUERY_TAG:-latest}"
+    image: "neurobagel/query_tool:${NB_QUERY_TAG:-nightly}"
     profiles:
       - "local_federation"
       - "full_stack"