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[MNT] Add example scripts for creating data dictionary + graph data JSON schema #427
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Reviewer's Guide by SourceryThis pull request introduces two new scripts that generate JSON schemas for the Neurobagel data dictionary and graph data models. These scripts use the Pydantic models to create the schemas and output them to JSON files. Sequence diagram for JSON schema generationsequenceDiagram
participant Script
participant PydanticModel
participant FileSystem
Script->>PydanticModel: model_json_schema()
PydanticModel-->>Script: JSON schema
Script->>FileSystem: Write schema to file
Note over Script,FileSystem: Writes formatted JSON with indent=2
Flow diagram for JSON schema generation processgraph TD
A[Pydantic Models] --> B[generate_dictionary_jsonschema.py]
A --> C[generate_graphdata_jsonschema.py]
B --> D[neurobagel_datadictionary.schema.json]
C --> E[neurobagel_graphdata.schema.json]
subgraph Models
F[DataDictionary Model] -.-> A
G[Dataset Model] -.-> A
end
File-Level Changes
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #427 +/- ##
=======================================
Coverage 98.55% 98.55%
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Files 18 18
Lines 1109 1109
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Hits 1093 1093
Misses 16 16 ☔ View full report in Codecov by Sentry. |
Changes proposed in this pull request:
Checklist
This section is for the PR reviewer
[ENH]
,[FIX]
,[REF]
,[TST]
,[CI]
,[MNT]
,[INF]
,[MODEL]
,[DOC]
) (see our Contributing Guidelines for more info)skip-release
(to be applied by maintainers only)Closes #XXXX
For new features:
For bug fixes:
Summary by Sourcery
New Features: