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bumps version numbers in readme
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nellore committed Jul 7, 2015
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![Rail-RNA logo](https://github.com/nellore/rail/blob/master/assets/railrnalogodark.png)
====

This is the official repo for Rail-RNA, software for RNA-seq analysis. [Download](https://github.com/nellore/rail/raw/v0.1.7c/releases/install_rail-rna-0.1.7c) the latest stable release. **Ask questions in the repo's Gitter: [![Join the chat at https://gitter.im/nellore/rail](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/nellore/rail?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge) .**
This is the official repo for Rail-RNA, software for RNA-seq analysis. [Download](https://github.com/nellore/rail/raw/v0.1.7d/releases/install_rail-rna-0.1.7d) the latest stable release. **Ask questions in the repo's Gitter: [![Join the chat at https://gitter.im/nellore/rail](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/nellore/rail?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge) .**

Get interested
-----
Expand All @@ -23,21 +23,21 @@ Read the [preprint](http://biorxiv.org/content/early/2015/05/07/019067) for more

Get set up
-----
Start with a recent (>= 2009) Mac OS or Linux box. Download [`install_rail-rna-0.1.7c`](https://github.com/nellore/rail/raw/v0.1.7c/releases/install_rail-rna-0.1.7c), change to the directory containing it, and make the installer executable with
Start with a recent (>= 2009) Mac OS or Linux box. Download [`install_rail-rna-0.1.7d`](https://github.com/nellore/rail/raw/v0.1.7d/releases/install_rail-rna-0.1.7d), change to the directory containing it, and make the installer executable with
```
chmod +x install_rail-rna-0.1.7c
chmod +x install_rail-rna-0.1.7d
```
Now run
```
sudo ./install_rail-rna-0.1.7c
sudo ./install_rail-rna-0.1.7d
```
to install for all users or
```
./install_rail-rna-0.1.7c
./install_rail-rna-0.1.7d
```
to install for just you. Check
```
./install_rail-rna-0.1.7c -h
./install_rail-rna-0.1.7d -h
```
for more installation options. If the executable doesn't work, you may need [Python](http://www.python.org). You'll also need Bowtie 1 and 2 indexes of the appropriate genome assembly if you will be running Rail-RNA in either its single-computer (local) or IPython Parallel (parallel) modes. The easiest way to get these is by downloading an [Illumina iGenome](http://support.illumina.com/sequencing/sequencing_software/igenome.html). If running Rail-RNA on EMR (elastic mode) and aligning to hg19, the assembly can be specified at the command line with the `-a` parameter. More assemblies are on their way.

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