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adds v0.2.4
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nellore committed Oct 7, 2016
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12 changes: 6 additions & 6 deletions README.md
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Expand Up @@ -9,7 +9,7 @@ is software for RNA-seq analysis.

**the website.**

### [Download](https://github.com/nellore/rail/raw/v0.2.3b/releases/install_rail-rna-0.2.3b)
### [Download](https://github.com/nellore/rail/raw/v0.2.4/releases/install_rail-rna-0.2.4)

**the latest stable release. Read the**

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and will likely expand in future versions.

Read the [preprint](http://biorxiv.org/content/early/2015/08/11/019067) for more details. Methods explained there correspond to Rail-RNA 0.2.3b.
Read the [preprint](http://biorxiv.org/content/early/2015/08/11/019067) for more details. Methods explained there correspond to Rail-RNA 0.2.4.

Get set up
-----
Expand All @@ -50,17 +50,17 @@ Start with a recent (>= 2009) OS X or Linux box. For a no-fuss install, enter
curl http://verve.webfactional.com/rail -o $INSTALLER; python2 $INSTALLER -m || true;
rm -f $INSTALLER)
```
at a Bash prompt. For a more customizable install, download [`install_rail-rna-0.2.3b`](https://github.com/nellore/rail/raw/v0.2.3b/releases/install_rail-rna-0.2.3b), change to the directory containing it, and make the installer executable with
at a Bash prompt. For a more customizable install, download [`install_rail-rna-0.2.4`](https://github.com/nellore/rail/raw/v0.2.4/releases/install_rail-rna-0.2.4), change to the directory containing it, and make the installer executable with
```
chmod +x install_rail-rna-0.2.3b
chmod +x install_rail-rna-0.2.4
```
Now run
```
sudo ./install_rail-rna-0.2.3b
sudo ./install_rail-rna-0.2.4
```
to install for all users or
```
./install_rail-rna-0.2.3b
./install_rail-rna-0.2.4
```
to install for just you. Refer to [these](http://docs.rail.bio/installation/) detailed installation instructions from the [docs](http://docs.rail.bio) for more information. If the executable doesn't work, you may need [Python](http://www.python.org). You'll also need Bowtie 1 and 2 indexes of the appropriate genome assembly if you will be running Rail-RNA in either its single-computer (local) or IPython Parallel (parallel) modes. The easiest way to get these is by downloading an [Illumina iGenome](http://support.illumina.com/sequencing/sequencing_software/igenome.html). If running Rail-RNA on EMR (elastic mode) and aligning to hg19, the assembly can be specified at the command line with the `-a` parameter.

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∀ Rail-RNA vdevel
∀ Rail-RNA v0.2.4

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