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34 changes: 34 additions & 0 deletions .gitignore
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HELP.md
target/
!.mvn/wrapper/maven-wrapper.jar
!**/src/main/**/target/
!**/src/test/**/target/

### STS ###
.apt_generated
.classpath
.factorypath
.project
.settings
.springBeans
.sts4-cache
.nextflow

### IntelliJ IDEA ###
.idea
*.iws
*.iml
*.ipr

### NetBeans ###
/nbproject/private/
/nbbuild/
/dist/
/nbdist/
/.nb-gradle/
build/
!**/src/main/**/build/
!**/src/test/**/build/

### VS Code ###
.vscode/
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18 changes: 18 additions & 0 deletions .mvn/wrapper/maven-wrapper.properties
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# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
distributionUrl=https://repo.maven.apache.org/maven2/org/apache/maven/apache-maven/3.9.1/apache-maven-3.9.1-bin.zip
wrapperUrl=https://repo.maven.apache.org/maven2/org/apache/maven/wrapper/maven-wrapper/3.2.0/maven-wrapper-3.2.0.jar
30,012 changes: 20,009 additions & 10,003 deletions example/compounds/example_compounds.tsv

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85,683 changes: 57,123 additions & 28,560 deletions example/ms_dataset/DOM_a.mzML

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33,975 changes: 22,651 additions & 11,324 deletions example/ms_dataset/DOM_b.mzXML

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1,821 changes: 1,215 additions & 606 deletions example/mzmine_batch_config/smallest_test_batch.xml

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