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updated the default notebook to have a quick guide for the various #62

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updated the default notebook to have a quick guide for the various #62

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8fa12d1
updated the default notebook to have a quick guide for the various me…
chaksoham Oct 31, 2020
7e77773
updated push and build scripts for 2.9.1
chaksoham Nov 17, 2020
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2 changes: 1 addition & 1 deletion build.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -19,4 +19,4 @@ rm cellorganizer-binaries.tgz

#docker build --no-cache -t icaoberg/cellorganizer-jupyter:latest .
docker build -t murphylab/cellorganizer-jupyter:latest .
docker tag murphylab/cellorganizer-jupyter:latest murphylab/cellorganizer-jupyter:v2.9.0
docker tag murphylab/cellorganizer-jupyter:latest murphylab/cellorganizer-jupyter:v2.9.1
26 changes: 24 additions & 2 deletions files/Download_files.ipynb
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Expand Up @@ -5,7 +5,29 @@
"metadata": {},
"source": [
"# Download files from the CellOrganizer site\n",
"Run this notebook to download files associated with this CellOrganizer release."
"Run this notebook to download files associated with this CellOrganizer release.\n",
"\n",
"Here are a quick guide for using various nethods from cellorganizer\n",
"\n",
"<ul>\n",
" <li>img2slml, the top-level function to train generative models of cells</li>\n",
" <li>slml2img, the top-level function to generate simulated instances from a trained generative model.</li>\n",
" <li>slml2report, the top-level function to generate a report from comparing generative models.\n",
"</li>\n",
"</ul>\n",
"\n",
"#### img2slml( dimensionality, dnaImagesDirectoryPath, cellImagesDirectoryPath,protienImagesDirectoryPath , options)\n",
"\n",
"#### slml2info([model file],options)\n",
"\n",
"#### slml2report(model_file1 , model_file2, options)\n",
"\n",
"#### slml2img([model file], options)\n",
"\n",
"All files require full qualified path for them.\n",
"options are model or method specific dictionary, refer to given demos to understand how they work.\n",
"\n",
"Refer the http://www.cellorganizer.org/ website for more details."
]
},
{
Expand Down Expand Up @@ -56,4 +78,4 @@
},
"nbformat": 4,
"nbformat_minor": 2
}
}
2 changes: 1 addition & 1 deletion push.sh
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@@ -1,4 +1,4 @@
!/bin/bash

docker push murphylab/cellorganizer-jupyter:latest
docker push murphylab/cellorganizer-jupyter:v2.9.0
docker push murphylab/cellorganizer-jupyter:v2.9.1