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  1. RNA-FM RNA-FM Public

    Nature Methods: RNA foundation model (together with RhoFold)

    Jupyter Notebook 276 29

  2. RhoFold RhoFold Public

    Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach

    Python 158 20

  3. e2efold e2efold Public

    pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

    Python 114 19

  4. Dense-Homolog-Retrieval Dense-Homolog-Retrieval Public

    Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

    Python 106 6

  5. RiboDiffusion RiboDiffusion Public

    ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

    Python 47 5

  6. RhoDesign RhoDesign Public

    Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.

    Jupyter Notebook 43 5

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