update dependencies to work with protobuf 5 #3842

Job	Run time
docs (./packages/autogen-core)	1m 59s
format	55s
lint	56s
mypy (./packages/autogen-core)	3m 15s
mypy (./packages/autogen-magentic-one)	1m 22s
pyright (./packages/autogen-core)	1m 1s
mypy (./packages/agbench)	58s
test (./packages/autogen-core)	1m 3s
pyright (./packages/autogen-magentic-one)	1m 15s
test (./packages/autogen-magentic-one)	2m 0s
mypy (./packages/autogen-ext)	3m 9s
pyright (./packages/agbench)	1m 10s
test (./packages/autogen-ext)	4m 17s
mypy (./packages/autogen-agentchat)	1m 24s
pyright (./packages/autogen-ext)	1m 15s
test (./packages/autogen-agentchat)	1m 7s
mypy (./packages/magentic-one-cli)	1m 29s
pyright (./packages/autogen-agentchat)	1m 0s
pyright (./packages/magentic-one-cli)	59s
check-proto-changes-python	1m 25s
docs-example-check (./packages/autogen-core)	3m 5s
markdown-code-lint	2m 21s
samples-code-check	58s
codecov (./packages/autogen-core)	8s
codecov (./packages/autogen-magentic-one)	7s
codecov (./packages/autogen-ext)	8s
codecov (./packages/autogen-agentchat)	9s
	38m 55s

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