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  1. cromwell-kccg-mutect2-chip cromwell-kccg-mutect2-chip Public

    Detect clonal haematopoiesis of indeterminate potential (CHIP) mutations using the GATK4 Mutect2 somatic variant calling pipeline and the Cromwell workflow engine.

    WDL 3 3

  2. warp warp Public

    Forked from shyamrav/warp

    WDL Analysis Research Pipelines

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  3. wdl wdl Public

    Forked from openwdl/wdl

    Workflow Description Language - Specification and Implementations

    Java

  4. pipeline-docs pipeline-docs Public

    Documentation for running various pipelines at the KCCG

  5. Hail-joint-caller Hail-joint-caller Public

    Forked from EricUrng/Hail-joint-caller

    Jupyter Notebook

  6. KCCG-CB-WDLPipelines KCCG-CB-WDLPipelines Public

    Forked from trinhan/WDLPipelines

    WDL pipelines for the KCCG computational biology group

    WDL