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update script
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mfroeling committed Jan 6, 2025
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11 changes: 8 additions & 3 deletions pages/seg_script.md
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Expand Up @@ -34,9 +34,13 @@ Below is a short manual on how to use these tools. The scripts and so example da

## QMRITools

Install QMRITools for the worlfram enging using the `Install_QMRITools.wls` WolframScript.
Install the latest version of QMRITools for the worlfram enging using the `Install_QMRITools.wls` WolframScript.

The latest release link needed for the command line command can be found on the releases [page](https://github.com/mfroeling/QMRITools/releases).
``` bash
wolframscript -f "path to file\Install_QMRITools.wls"
```

To install an other version of the QMRITools from the gihub release [pages](https://github.com/mfroeling/QMRITools/releases) use

``` bash
wolframscript -f "path to file\Install_QMRITools.wls" https://github.com/mfroeling/QMRITools/releases/download/4.x.x/QMRITools-4.x.x.paclet
Expand All @@ -56,7 +60,8 @@ Run the segmentation script (networks are currelty for out-phase dixon data):
wolframscript -f "path to file\Segment_Nii.wls" "file to be segmented.nii.gz" "output file.nii"
```

For the situation where you run the scrip from its own folder with the test folder also there this will be script
It does not matter what part of the leg it is and if one or two legs are in the field of view.
For the situation where you run the scrip from its own folder with the test folder also there this will be script.

``` bash
wolframscript -f "Segment_Nii.wls" "test data\test_up.nii.gz" "test data\out_up.nii"
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