Revert "update minimap wrapper"

This reverts commit 956d884.
metagenome-atlas · Dec 17, 2024 · 7c5ecf4 · 7c5ecf4
1 parent 2331806
commit 7c5ecf4
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/workflow/rules/assemble.smk b/workflow/rules/assemble.smk
@@ -505,7 +505,7 @@ if config["filter_contigs"]:
         resources:
             mem_mb=config["mem"] * 1000,
         wrapper:
-            "v5.5.0/bio/minimap2/aligner"
+            "v1.19.0/bio/minimap2/aligner"
 
     rule pileup_prefilter:
         input:
@@ -635,7 +635,7 @@ rule align_reads_to_final_contigs:
     resources:
         mem_mb=config["mem"] * 1000,
     wrapper:
-        "v5.5.0/bio/minimap2/aligner"
+        "v1.19.0/bio/minimap2/aligner"
 
 
 rule pileup_contigs_sample:

diff --git a/workflow/rules/genecatalog.smk b/workflow/rules/genecatalog.smk
@@ -234,7 +234,7 @@ rule index_genecatalog:
     params:
         index_size="12G",
     wrapper:
-        "v5.5.0/bio/minimap2/index"
+        "v1.19.0/bio/minimap2/index"
 
 
 rule concat_all_reads:
@@ -266,7 +266,7 @@ rule align_reads_to_Genecatalog:
         extra="-x sr --split-prefix {sample}_split_ ",
         sort="coordinate",
     wrapper:
-        "v5.5.0/bio/minimap2/aligner"
+        "v1.19.0/bio/minimap2/aligner"
 
 
 rule pileup_Genecatalog:

diff --git a/workflow/rules/genomes.smk b/workflow/rules/genomes.smk
@@ -206,7 +206,7 @@ if config["genome_aligner"] == "minimap":
         resources:
             mem_mb=config["mem"] * 1000,
         wrapper:
-            "v5.5.0/bio/minimap2/index"
+            "v1.19.0/bio/minimap2/index"
 
     rule align_reads_to_genomes:
         input:
@@ -223,7 +223,7 @@ if config["genome_aligner"] == "minimap":
         resources:
             mem_mb=config["mem"] * 1000,
         wrapper:
-            "v5.5.0/bio/minimap2/aligner"
+            "v1.19.0/bio/minimap2/aligner"
 
 elif config["genome_aligner"] == "bwa":