Fix dependency versions (#58)

Closes #56 #57

deepflash2/gt.py

@@ -22,7 +22,7 @@ def import_sitk():
         assert SimpleITK.Version_MajorVersion()==2
     except:
         print('Installing SimpleITK. Please wait.')
-        install_package("SimpleITK==2.0.2")
+        install_package("SimpleITK==2.1.1.1")
     import SimpleITK
     return SimpleITK
 
@@ -162,4 +162,4 @@ def show_gt(self, method='STAPLE', max_n=6, files=None, figsize=(15,7), **kwargs
             plt.tight_layout()
             plt.show()
             display(plt_df)
-            display(Markdown('---'))
+            display(Markdown('---'))

settings.ini

@@ -5,7 +5,7 @@ user = matjesg
 description = A Deep learning pipeline for segmentation of fluorescent labels in microscopy images
 keywords = unet, deep learning, semantic segmentation, microscopy, fluorescent labels
 author = Matthias Griebel
-author_email = matthias.griebel@uni-wuerzburg.com
+author_email = griebelmatthias@gmail.com
 copyright = Würzburg University
 branch = master
 version = 0.2.3
@@ -15,7 +15,7 @@ language = English
 custom_sidebar = True
 license = apache2
 status = 2
-requirements = fastai>=2.1.7 zarr>=2.0 tifffile==2022.4.8 scikit-image imageio ipywidgets openpyxl imagecodecs albumentations>=1.0.0 natsort>=7.1.1 numba>=0.52.0 opencv-python-headless>=4.1.1,<4.5.5 timm==0.6.7
+requirements = fastai>=2.1.7 zarr>=2.0 tifffile==2022.4.8 scikit-image imageio ipywidgets openpyxl imagecodecs pandas==1.4.0 fastcore==1.5.27 albumentations>=1.0.0 natsort>=7.1.1 numba>=0.52.0 opencv-python-headless>=4.1.1,<4.5.5 timm==0.6.7
 pip_requirements = segmentation-models-pytorch-deepflash2
 conda_requirements = segmentation_models_pytorch>=0.3.0
 nbs_path = nbs