A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.

R package to Import and Modify SVG (XML) Graphic Files

Updated FlaGs version. Replaces tkinter module for matplotlib for the graphical output.

An R package implementing the UMAP dimensionality reduction method.

Random selection of useful code chunks and examples for bioinformatics

A statically generated catalog of available Snakemake workflows

Visualize and annotate genomic coverage with ggplot2

GEKKO Python for Machine Learning and Dynamic Optimization

Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

Codon Usage Analysis and Prediction of Gene Expressivity

Facilitating UniRep Enzyme Engineering

Reimplementation of the UniRep protein featurization model.

An example GitHub Action (CI) to build a Singularity container

Visualize and annotate genomic coverage with ggplot2

Sample R package with C/C++ code to trigger Address and Undefined Behaviour Sanitizers

Process next generation sequencing data obtained from CRISPRi repression library screenings

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

Pipeline for automatic processing and quality control of mass spectrometry data

Package to link to CGAL (Computational Geometry Algorithms Library) header files. Downloads CGAL version 6.0.1 on install.

This is the development home of the workflow management system Snakemake. For general information, see

This repository contains best profile readme's for your reference.

Simple Features for R

A cross-platform proteomics data analysis suite

R markdown notebooks for analysis of CRISPR inhibition library data

R-hub API client

CRISPR Cas9 ontarget prediction software

A Linux desktop featuring a traditional layout, built from modern technology and introducing brand new innovative features.

📍 Repel overlapping text labels away from each other in your ggplot2 figures.