update: small improvements for display of data; selected variables an…

…d theme, see #4
m-jahn · Feb 1, 2022 · 1e91dcd · 1e91dcd
1 parent cd2e547
commit 1e91dcd
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Showing 3 changed files with 6 additions and 2 deletions.
diff --git a/R/custom_theme.R b/R/custom_theme.R
@@ -35,8 +35,10 @@ custom.lattice <- function() {
     reference = 1, bg = 0, fg = 1)
   theme$superpose.symbol$fill <- c("#00526D", colorspace::rainbow_hcl(n = 6, c = 90, l = 50))
   theme$superpose.symbol$pch <- 19
+  theme$superpose.symbol$cex <- 0.7
   theme$superpose.line$lwd <- 2
   theme$plot.symbol$pch <- 19
+  theme$plot.symbol$cex <- 0.7
   theme$plot.line$lwd <- 2
   theme$strip.background$col <- c(grey(0.95), grey(0.85))
   theme$strip.shingle$col <- c(grey(0.75), grey(0.65))

diff --git a/data/CRISPRi_library_2022.yml b/data/CRISPRi_library_2022.yml
@@ -71,10 +71,10 @@ default:
     - ggplot1
     - ggplot2
   grouping:
+    - by condition
     - by cond. variable
     - by X variable
     - by Y variable
-    - by condition
     - none
   plot_type:
     - points and lines

diff --git a/data/Cupriavidus_BarSeq_2021.yml b/data/Cupriavidus_BarSeq_2021.yml
@@ -19,7 +19,9 @@ data:
       - succinate - continuous
       - succinate - pulse
     selected:
-      - fructose - continuous
+      - fructose - pulse
+      - formate - pulse
+      - succinate - pulse
   timepoint:
     values:
       - 0