Merge pull request #10 from lozuponelab/fix_what_symbol_issue

Fix "what SYMBOL" issue
lozuponelab · Mar 3, 2023 · 706f896 · 706f896
2 parents cbef7b2 + ba9ba8b
commit 706f896
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/KEGG_parser/parsers.py b/KEGG_parser/parsers.py
@@ -194,15 +194,16 @@ def split_module_reaction(current_dict, current_entry_name, current_entry_data):
     'COMPOUND': add_module_orthology, 'COMMENT': return_self, 'DBLINKS': add_nested_dict
 }
 
-NOT_CAPTURED_KO_FIELDS = ('REFERENCE', 'AUTHORS', 'TITLE', 'JOURNAL', 'SEQUENCE', 'BRITE')
+NOT_CAPTURED_KO_FIELDS = ('REFERENCE', 'AUTHORS', 'TITLE', 'JOURNAL', 'SEQUENCE', 'BRITE', 'SYMBOL')
 
 NOT_CAPTURED_RN_FIELDS = ('REFERENCE', 'AUTHORS', 'TITLE', 'JOURNAL')
 
 NOT_CAPTURED_CO_FIELDS = ('BRITE', 'ATOM', 'BOND', 'BRACKET', 'ORIGINAL', 'REPEAT', 'NODE', 'EDGE', 'SEQUENCE',
                           'GENE', 'ORGANISM', 'TYPE', 'EFFICACY', 'PRODUCT', 'CLASS', 'DISEASE', 'TARGET',
-                          'METABOLISM', 'INTERACTION', 'STR_MAP', 'REFERENCE', 'AUTHORS', 'TITLE', 'JOURNAL')
+                          'METABOLISM', 'INTERACTION', 'STR_MAP', 'REFERENCE', 'AUTHORS', 'TITLE', 'JOURNAL',
+                          'NETWORK')
 
-NOT_CAPTURED_PATHWAY_FIELDS = ('GENE', 'ORGANISM', 'REFERENCE', 'AUTHORS', 'TITLE', 'JOURNAL')
+NOT_CAPTURED_PATHWAY_FIELDS = ('GENE', 'ORGANISM', 'REFERENCE', 'AUTHORS', 'TITLE', 'JOURNAL', 'INCLUDING')
 
 NOT_CAPTURED_ORGANISM_FIELDS = ('AASEQ', 'NTSEQ')