Add option to enable Claude Thinking

[bryanhoulton]

This is my first contribution and I'm not sure how to test, so I'm opening as a draft. Any pointers are appreciated!

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Latest commit: fbd0ffc

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[bryanhoulton]

Struggling a lot with the local dev here. Running into issues running checks.

 Failed to parse `/Users/bryanhoulton/Desktop/Projects/agents/ruff.toml`: TOML parse error at line 2, column 1
  |
2 | indent-width = 4
  | ^^^^^^^^^^^^
unknown field `indent-width`, expected one of `allowed-confusables`, `builtins`, `cache-dir`, `dummy-variable-rgx`, `exclude`, `extend`, `extend-exclude`, `extend-include`, `extend-ignore`, `extend-select`, `external`, `fix`, `fix-only`, `fixable`, `format`, `force-exclude`, `ignore`, `ignore-init-module-imports`, `include`, `line-length`, `required-version`, `respect-gitignore`, `select`, `show-source`, `show-fixes`, `src`, `namespace-packages`, `target-version`, `task-tags`, `typing-modules`, `unfixable`, `flake8-annotations`, `flake8-bandit`, `flake8-bugbear`, `flake8-builtins`, `flake8-comprehensions`, `flake8-errmsg`, `flake8-quotes`, `flake8-self`, `flake8-tidy-imports`, `flake8-type-checking`, `flake8-gettext`, `flake8-implicit-str-concat`, `flake8-import-conventions`, `flake8-pytest-style`, `flake8-unused-arguments`, `isort`, `mccabe`, `pep8-naming`, `pycodestyle`, `pydocstyle`, `pylint`, `pyupgrade`, `per-file-ignores`