Add msgf/sage to param schema so they end up in report

main.nf

@@ -1,6 +1,6 @@
 #!/usr/bin/env nextflow
 
-include { paramsSummaryMap } from 'plugin/nf-validation'
+include { paramsSummaryMap } from 'plugin/nf-schema'
 
 include { msgf_info_map; listify; stripchars_infile; get_regex_specialchars; read_header } from './modules.nf' 
 include { MSGFPERCO } from './workflows/msgf_perco.nf'

nextflow.config

@@ -1,7 +1,7 @@
 import groovy.json.JsonSlurper
 
 plugins {
-  id 'nf-validation'
+  id 'nf-[email protected]'
 }
 
 // Dont warn on withName in config without a process in running pipeline
@@ -16,7 +16,7 @@ params {
   external_config_version = 'master'
 
   name = false
-  input = false
+  input = null
   tdb = false
   mods = false
   sage = false

nextflow_schema.json

@@ -294,6 +294,12 @@
     "overbook_cpus_factor": {
       "type": "integer",
       "default": 1
+    },
+    "sage": {
+      "type": "boolean"
+    },
+    "msgf": {
+      "type": "boolean"
     }
   }
 }