TCM / FileDB improvements

[gipert]

No description provided.

[codecov]

Codecov Report

Attention: Patch coverage is 0% with 28 lines in your changes missing coverage. Please review.

Project coverage is 42.10%. Comparing base (4c5c933) to head (9608bc0).
Report is 8 commits behind head on main.

Files with missing lines	Patch %	Lines
...orkflow/src/legenddataflow/scripts/complete_run.py	0.00%	26 Missing ⚠️
workflow/src/legenddataflow/scripts/filedb.py	0.00%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #120      +/-   ##
==========================================
- Coverage   42.20%   42.10%   -0.11%     
==========================================
  Files          19       19              
  Lines        1206     1209       +3     
==========================================
  Hits          509      509              
- Misses        697      700       +3     

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[gipert]

The CI failure is due to recent Snakemake versions: https://github.com/snakemake/snakemake/releases/tag/v9.0.0

I don't understand how to fix it... @ggmarshall there's maybe something nice about reports in the latest release

[ggmarshall]

For the ignore keyslist there are 2 cases, for raw we want to just remove the unprocesable keys while for higher tiers we want to remove both

[gipert]

ah ok. i don't have time to implement this now, do you want to do it? this can be merged

[ggmarshall]

sure I can do