Updates for new PyGenePlexus release (#56)

- update GCP functions to use geneplexus v2.0.1 - update frontend links to readthedocs to look for v2.0.1
krishnanlab · Dec 18, 2024 · 4d603cf · 4d603cf
1 parent dbc290b
commit 4d603cf
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Showing 7 changed files with 9 additions and 9 deletions.
diff --git a/frontend/src/components/Footer.tsx b/frontend/src/components/Footer.tsx
@@ -23,7 +23,7 @@ const Footer = () => (
       </Link>
       <Link to="/about#terms-of-use">Terms of Use</Link>
       <Link
-        to="https://pygeneplexus.readthedocs.io/en/latest/appendix/license.html"
+        to="https://pygeneplexus.readthedocs.io/en/v2.0.2/appendix/license.html"
         showArrow={false}
       >
         License

diff --git a/frontend/src/pages/About.tsx b/frontend/src/pages/About.tsx
@@ -67,7 +67,7 @@ const AboutPage = () => {
               flip
             />
             <Button
-              to="https://pygeneplexus.readthedocs.io/en/latest/"
+              to="https://pygeneplexus.readthedocs.io/en/v2.0.2/"
               text="Docs"
               icon={<FaBook />}
               tooltip="Detailed information on how to use the package and how to interpret results"
@@ -88,7 +88,7 @@ const AboutPage = () => {
               flip
             />
             <Button
-              to="https://pygeneplexus.readthedocs.io/en/latest/notes/faqs.html"
+              to="https://pygeneplexus.readthedocs.io/en/v2.0.2/notes/faqs.html"
               text="FAQs"
               icon={<FaQuestion />}
               tooltip="Detailed help on some frequently asked questions"

diff --git a/frontend/src/pages/Analysis.tsx b/frontend/src/pages/Analysis.tsx
@@ -136,7 +136,7 @@ const AnalysisPage = () => {
             <>
               <Summary results={results} />
 
-              <Link to="https://pygeneplexus.readthedocs.io/en/latest/">
+              <Link to="https://pygeneplexus.readthedocs.io/en/v2.0.2/">
                 Learn more
               </Link>
 

diff --git a/frontend/src/pages/Home.tsx b/frontend/src/pages/Home.tsx
@@ -34,7 +34,7 @@ const HomePage = () => {
         </Flex>
 
         <p className="center">
-          <Link to="https://pygeneplexus.readthedocs.io/en/latest/notes/faqs.html">
+          <Link to="https://pygeneplexus.readthedocs.io/en/v2.0.2/notes/faqs.html">
             Looking for the old GenePlexus?
           </Link>
         </p>

diff --git a/frontend/src/pages/NewAnalysis.tsx b/frontend/src/pages/NewAnalysis.tsx
@@ -263,7 +263,7 @@ const NewAnalysisPage = () => {
   };
 
   /** limit options based on species */
-  /** https://pygeneplexus.readthedocs.io/en/latest/notes/data.html#preprocessed-data */
+  /** https://pygeneplexus.readthedocs.io/en/v2.0.2/notes/data.html#preprocessed-data */
   const filteredNetworkOptions = networkOptions.filter((option) => {
     if (
       option.id === "BioGRID" &&
@@ -302,7 +302,7 @@ const NewAnalysisPage = () => {
     toast(
       <>
         Selected options changed to be compatible with selected species.{" "}
-        <Link to="https://pygeneplexus.readthedocs.io/en/latest/notes/data.html">
+        <Link to="https://pygeneplexus.readthedocs.io/en/v2.0.2/notes/data.html">
           Learn more
         </Link>
         .

diff --git a/functions/convert_ids/convert_ids_deploy/requirements.txt b/functions/convert_ids/convert_ids_deploy/requirements.txt
@@ -1,4 +1,4 @@
 # An example requirements file. If your function has other dependencies,
 # add them below
 functions-framework==3.*
-geneplexus @ git+https://github.com/krishnanlab/PyGenePlexus@610ad9a
+geneplexus==2.0.2
diff --git a/functions/ml/ml_deploy/requirements.txt b/functions/ml/ml_deploy/requirements.txt
@@ -1,5 +1,5 @@
 # An example requirements file. If your function has other dependencies,
 # add them below
 functions-framework==3.*
-geneplexus @ git+https://github.com/krishnanlab/PyGenePlexus@610ad9a
+geneplexus==2.0.2
 flask-compress==1.*