[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

geneplexus/_config/config.py

@@ -15,7 +15,7 @@
 
 URL_DICT = {
     "Zenodo": "https://zenodo.org/records/14750555/files/",
-    "ZenodoAPI": "https://zenodo.org/api/records/14750555/files/"
+    "ZenodoAPI": "https://zenodo.org/api/records/14750555/files/",
 }
 
 CONFIG_PATH = pathlib.Path(__file__).parent.absolute()

geneplexus/download.py

@@ -5,12 +5,13 @@
 import shutil
 import tarfile
 import time
-import requests
 from typing import List
 from typing import Tuple
 from typing import Union
 from urllib.parse import urljoin
-# from . import util
+
+import requests
+
 from ._config import logger
 from ._config.config import ALL_SPECIES
 from ._config.config import LOG_LEVEL_TYPE
@@ -22,6 +23,8 @@
 from ._config.logger_util import stream_level_context
 from .exception import DownloadError
 
+# from . import util
+
 
 def download_select_data(
     data_dir: str,
@@ -110,7 +113,7 @@ def _download_and_extract(data_dir, file_cat, fn_download, data_loc, num_retries
         num_tries += 1
         logger.info(f"On attempt {num_tries} of downloading the file")
         try:
-            with requests.get(url, timeout = 2) as r:
+            with requests.get(url, timeout=2) as r:
                 if r.ok:
                     logger.debug(f"Response ok ({r!r}): {url=}")
                     with tarfile.open(fileobj=io.BytesIO(r.content), mode="r:gz") as tf: