Experimental setups organoids
Name
norm layer
track_running_stats
whole vol percentile norm
tile-wise percentile norm
intensity augm
dropout
use running stats in training
setup_01
InstanceNorm
True
yes
no
no
no
no
setup_02
InstanceNorm
True
yes
yes
no
no
no
setup_03
InstanceNorm
False
yes
no
no
no
no
setup_04
InstanceNorm
False
yes
yes
no
no
no
setup_05
InstanceNorm
True
yes
no
no
no
no
setup_06
BatchRenorm
True
yes
no
no
no
no
setup_07
NoNorm
False
yes
no
no
no
no
Experimental setups plants
Name
norm layer
track_running_stats
whole vol percentile norm
tile-wise percentile norm
intensity augm
dropout
use running stats in training
setup_01
InstanceNorm
True
yes
no
no
no
no
setup_02
InstanceNorm
True
yes
yes
no
no
no
setup_03
InstanceNorm
False
yes
no
no
no
no
setup_04
InstanceNorm
False
yes
yes
no
no
no
setup_05
InstanceNorm
True
yes
no
no
no
no
setup_06
BatchRenorm
True
yes
no
no
no
no
setup_07
NoNorm
False
yes
no
no
no
no
Experimental setups UNETR
(same for all 3 datasets)
Name
norm layer
track_running_stats
whole vol percentile norm
tile-wise percentile norm
intensity augm
dropout
use running stats in training
setup_01
InstanceNorm
False
yes
no
no
no
no
setup_02
InstanceNorm
True
yes
no
no
no
no
setup_03
BatchRenorm
True
yes
no
no
no
no
setup_04
NoNorm
False
yes
no
no
no
no