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1. analysis_pipelines analysis_pipelines Public

   Analysis pipelines for statistical genetic analysis

   R 8 4

2. stephenslab/scATACseq-topics stephenslab/scATACseq-topics Public

   Analysis of single-cell ATAC-seq data using topic models.

   R 5 2

3. xinhe-lab/ctwas xinhe-lab/ctwas Public

   causal TWAS (cTWAS)

   R 46 13

4. xinhe-lab/GSFA xinhe-lab/GSFA Public

   R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

   C++ 22 2

5. xinhe-lab/mapgen xinhe-lab/mapgen Public

   R package to perform gene mapping using functionally-informed genetic fine mapping

   R 7 3

6. HarteminkLab/TOP HarteminkLab/TOP Public

   R package to predict TF occupancy using DNase-seq or ATAC-seq data

   R 1 1