CTD-data-plotter

This is a Data plotter for CTD data for each Excel File.

There should only be one sheet per .xlsx file. (CSV support coming soon)

Requierments

Software tools

Latest Version of R and shiny, and a Browser.

In your R session run the following code to download shiny.

install.packages("shiny")

Variables

Each file should have the following variables.

• DepSM: Depth in Meters.
• Sal00: Salinity.
• Tv290C: Temperature is Celsius.
• FlSP: Florescence.
• SeaTurbMtr: Sea turbidity in Meters.
• Par: Photosynthetic active radiation.
• Sbeox0Mm/L: Dissolved Oxygen per liter.
• AltM
• Sbeox0PS

Install

In your shell terminal clone the repo to your machine and open it as a project in R studio.

git clone https://github.com/karan3242/CTD-data-plotter.git

Run using Shell

Navigate to the cloned folder and run the script.

Rscript CTD-data-plotter/ctd_plotter.R

Click on the Listening on link or past it in your browser's url bar to open the app.

Run using RStudio

Open Rstudio and run ctd_plotter.R

Use

• Add the path to your desired folder.
• Select desired files and variables.
• Select raw data line or Averaged line with or without standard error.
• Select image parameters.
• Provide the destination folder and file name
• Save the plot.

The averaged line used geom_smooth with "gam" method.

Plots will be saved as .png.