Maize

Maize genomics datasets

BGEM

• BGEM: backup location and some stats vcf file? BGEM DH? BGEM Founder lines?

In file /mnt/nrdstor/jyanglab/shared/maize/BGEM/BGEM_282_panel_V5_dp3.vcf.gz, we included the 282 association panel, BGEM DH lines, and their founders.

New ExPVP:

• GBTS: GSER2025060061P01/
  • provide me with some basic stats
• WGS: GSER2025060062P01/
  • provide me with some basic stats
• Genotype: /mnt/nrdstor/jyanglab/shared/maize/ExPVP/exPVP_resequencing_raw_V5.vcf.gz

Published ExPVP?

• Other US Inbred and CN, EU Inbred? The genotypes of published exPVP lines can be found in the papers Grzybowski et al. 2023, The Plant Journal; Wang et al. 2020, Nature Genetics

• The data can be found at /mnt/nrdstor/jyanglab/shared/maize/Global_panel_Marcin_V5 /mnt/nrdstor/jyanglab/shared/maize/China_breeding_lines/

Maize RNA-seq datasets

RNA-seq data: /work/jyanglab/gxu6/shared/01seq_data/01Heterosis_RNA-seq/fasq/

Reads count data: eQTL results:

Maize Phenomics datasets