Fastq scripts upgrade #84
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… handle arguments
Updated some error handling, fixed spacing and syntax for Black/Flake8 best practices, removed some py2 legacy compatibility
Black/Flake8 best practices, broke out arg parsing and header formatting to make code more modular and readable
Broke out argument parsing for ease of reading, Black/flake8 best practices, some small changes to sytax like using with() for keeping file open
Removed some py2 compatibility imports, Black/flake8 best practices, large reorganziation to break up the monolithic main function into more servicable sub functions
…ctices Also incorporated error raising rather than just print statements
…or newer python3 conventions
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I went through and re-formatted/re-factored for modern python best practices (following Black and Flake8). Added some documentation and raising errors. Additionally, updated some python2 code styles in a couple scripts!