Miscellaneous R functions helpful for analysis. Not built for public consumption.

R package for plotting bioinformatics results, especially those from the ezlimma package

Directional MaxP test (DMT & ScreenDMT) for replication, mediation, and qualitative interactions

Generate RMD files for bioinformatic workflow

R package that streamlines & extends limma for linear modeling of omics data

Data analysis to reproduce results from Communications Biology paper

High-throughput mediation analysis (Hitman)

Supplementary note describing the Hitman algorithm and its validation

Analyses & data for SLIMM-T2D trial omics

Tutorial to teach beginners with no programming experience the basics of R and common bioinformatics workflows

Data and analysis of gut microbiome in celiac disease

Proteomics from stool of mice, some of whom received antibiotics

Data for "FoxK1 and FoxK2 in Insulin Regulation of Cellular and Mitochondrial Metabolism" (Nature Communications, 2019)

R package for integration of Seahorse extracellular flux (XF) data with metabolic modeling utilizing the R modeling package sybil.

Supplementary code + data for Altindis et al., Viral insulin-like peptides activate human insulin and IGF-1 receptor signaling: A paradigm for host–microbe interactions, PNAS, 2018.

Code/output from paired analysis of brown vs. white human preadipocytes from Ramirez et al.

Code to accompany the paper "How accurate can genetic predictions be?" by Dreyfuss, Levner, et al.

Matlab code and data to reproduce results from "Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM" by Dreyfuss, Zucker, et al.

Data/code/output for "Adipose-derived circulating miRNAs regulate gene expression in other tissues" by Thomou, Mori, Dreyfuss, et al. (2017)