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Machine learning and pan genome analysis of CF strains

Jupyter Notebook 1 Updated Apr 28, 2022

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Python 36 17 Updated Jan 11, 2019

Neuroevolution of creatures using Haskell

Haskell 1 Updated Mar 16, 2022

OxidizeME model and notebooks

Python 2 3 Updated Jun 11, 2021

Official git repository for Biopython (originally converted from CVS)

Python 4,524 1,778 Updated Mar 11, 2025

COBRApy is a package for constraint-based modeling of metabolic networks.

Python 488 217 Updated Mar 5, 2025

Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

Jupyter Notebook 27 6 Updated Jul 6, 2023

A Python framework for structural systems biology

Python 107 28 Updated Dec 7, 2020

Build, share, and embed visualizations of metabolic pathways.

JavaScript 218 77 Updated Aug 15, 2024

Data and tools necessary to construct iLE1678-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression

Python 1 Updated Jan 11, 2019

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Python 1 1 Updated Jan 11, 2019
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