Skip to content

Add the option to add a suffix to the newly created file name #103

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 1 commit into
base: devel
Choose a base branch
from
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 6 additions & 4 deletions src/imcflibs/imagej/misc.py
Original file line number Diff line number Diff line change
Expand Up @@ -523,7 +523,7 @@
dict_writer.writerows(content)


def save_image_in_format(imp, format, out_dir, series, pad_number, split_channels):
def save_image_in_format(imp, format, out_dir, series, pad_number, split_channels, suffix=""):
"""Save an ImagePlus object in the specified format.

This function provides flexible options for saving ImageJ images in various
Expand Down Expand Up @@ -552,6 +552,8 @@
If True, split channels and save them individually in separate folders
named "C1", "C2", etc. inside out_dir. If False, save all channels in a
single file.
suffix : str, optional
Text to be added to the filename, by default an empty string.

Notes
-----
Expand Down Expand Up @@ -616,20 +618,20 @@

out_path = os.path.join(
dir_to_save[index],
basename + "_series_" + str(series).zfill(pad_number),
basename + "_series_" + str(series).zfill(pad_number) + suffix,
)

if format == "ImageJ-TIF":
pathtools.create_directory(dir_to_save[index])
IJ.saveAs(current_imp, "Tiff", out_path + ".tif")
IJ.saveAs(current_imp, "Tiff", out_path + suffix + ".tif")

Check warning on line 626 in src/imcflibs/imagej/misc.py

View check run for this annotation

Codecov / codecov/patch

src/imcflibs/imagej/misc.py#L626

Added line #L626 was not covered by tests

elif format == "BMP":
out_folder = os.path.join(out_dir, basename + os.path.sep)
pathtools.create_directory(out_folder)
StackWriter.save(current_imp, out_folder, "format=bmp")

else:
bf.export(current_imp, out_path + out_ext[format])
bf.export(current_imp, out_path + suffix + out_ext[format])

Check warning on line 634 in src/imcflibs/imagej/misc.py

View check run for this annotation

Codecov / codecov/patch

src/imcflibs/imagej/misc.py#L634

Added line #L634 was not covered by tests

current_imp.close()

Expand Down
Loading