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Tags: ikmb/TOFU-MAaPO

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1.5.0

update container version for 1.5.0 release

1.4.0

Version 1.4.0

1.3.2

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Version 1.3.2 update

1.3.1

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1.3.1

* adding minimap2 to environment

* adding concot and maxbin2 to env

* updating env

* updating R to 4.0

* misc changes to assembly module, adding metaphlan merge-script, adjusting configs

* introducing subgrouping for Vamb for big cohorts and bug fixing

* results are now published together in specific folders

* updating usage docs and more publishing standardization

* updated usage docs, updated configs for kiel medcluster, misc cleaning

1.3.0

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Version 1.3 Extended Genome Assembly (#8)

* EXTended ASsembly, integrating MAGScoT bin refinement

* adding new medcluster filestorage to conf

* changing assembly-workflow to use the meta(data)-array

* removing duplicated python installation in default docker container

* another step towards utilizing multiple docker containers inside the pipeline, removing tools from default container that can be used from external containers

* updating humann and metaphlan

* adding expected abundance table per sample for MAGs, adding possible solution for updating DBs for humann and metaphlan and updating configs

* adding docs

1.2.2

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Merge pull request #7 from ikmb/dev

version 1.2.2

1.2.1

version 1.2.1; change of LICENSE, added skip_QC functionality

1.2.0

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Merge pull request #6 from ikmb/dev

1.2.0

1.1.2

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Merge pull request #4 from ikmb/dev

Dev

1.1.1

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Merge pull request #3 from ikmb/dev

Dev