Tags: ikmb/TOFU-MAaPO
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1.3.1 * adding minimap2 to environment * adding concot and maxbin2 to env * updating env * updating R to 4.0 * misc changes to assembly module, adding metaphlan merge-script, adjusting configs * introducing subgrouping for Vamb for big cohorts and bug fixing * results are now published together in specific folders * updating usage docs and more publishing standardization * updated usage docs, updated configs for kiel medcluster, misc cleaning
Version 1.3 Extended Genome Assembly (#8) * EXTended ASsembly, integrating MAGScoT bin refinement * adding new medcluster filestorage to conf * changing assembly-workflow to use the meta(data)-array * removing duplicated python installation in default docker container * another step towards utilizing multiple docker containers inside the pipeline, removing tools from default container that can be used from external containers * updating humann and metaphlan * adding expected abundance table per sample for MAGs, adding possible solution for updating DBs for humann and metaphlan and updating configs * adding docs
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